MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:30.0 nTPM
GTEx:8.3 nTPM
FANTOM5:24.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
2586 Male, age 75, left hemisphere 33.9
2828 Female, age 72, unknown 28.4
1833 Male, age 53, unknown 25.2
2219 Male, age 76, both hemispheres 25.1
1827 Male, age 72, unknown 23.5
2019 Male, age 18, unknown 22.6
1830 Male, age 51, unknown 21.5
2411 Female, age 72, unknown 21.1
2666 Male, age 74, left hemisphere 20.4
1870 Female, age 42, unknown 20.2
Dorsal raphe nucleus
nTPM: 26.3
2016 Female, age 72, unknown 30.6
1828 Male, age 53, unknown 27.3
2047 Male, age 72, unknown 25.9
2298 Female, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 23.9
Inferior colliculus
nTPM: 24.7
2849 Male, age 72, unknown 28.3
1848 Female, age 42, unknown 26.7
1890 Male, age 53, unknown 25.0
2097 Female, age 72, unknown 18.9
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 25.0
1795 Male, age 51, unknown 27.3
2502 Female, age 75, unknown 26.0
1947 Male, age 18, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 28.3
2850 Male, age 76, both hemispheres 34.9
1840 Male, age 53, unknown 29.0
2464 Female, age 72, unknown 27.6
1831 Male, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 36.3
2272 Male, age 74, both hemispheres 27.9
2053 Male, age 18, unknown 25.8
Pretectal area
nTPM: 23.1
2273 Male, age 74, both hemispheres 28.4
2316 Male, age 76, right hemisphere 26.3
2224 Female, age 72, unknown 23.5
2007 Male, age 72, unknown 23.3
2825 Male, age 18, unknown 22.9
1944 Female, age 72, unknown 22.8
2667 Female, age 75, unknown 22.6
2407 Male, age 75, both hemispheres 22.4
1815 Male, age 53, unknown 21.9
1816 Male, age 51, unknown 20.0
1817 Female, age 42, unknown 20.0
Red nucleus
nTPM: 24.3
2503 Female, age 72, unknown 28.9
2769 Male, age 72, unknown 27.3
2785 Male, age 18, unknown 26.5
1904 Male, age 53, unknown 25.4
1954 Female, age 42, unknown 25.3
2227 Male, age 72, unknown 25.2
1865 Male, age 51, unknown 23.6
2588 Male, age 74, left hemisphere 23.2
2584 Male, age 75, left hemisphere 22.6
2823 Male, age 76, right hemisphere 22.2
2725 Female, age 75, unknown 21.0
1821 Female, age 72, unknown 20.6
Substantia nigra
nTPM: 22.1
2699 Male, age 18, unknown 27.8
2665 Male, age 74, both hemispheres 25.2
2590 Female, age 75, unknown 23.0
1851 Male, age 51, unknown 22.9
2583 Male, age 75, right hemisphere 22.6
1916 Female, age 42, unknown 21.5
2409 Female, age 72, unknown 20.8
1941 Male, age 53, unknown 20.7
1889 Female, age 72, unknown 18.5
2241 Male, age 72, unknown 17.9
Superior colliculus
nTPM: 24.1
2664 Male, age 75, both hemispheres 29.1
1995 Male, age 72, unknown 27.9
2668 Female, age 75, unknown 25.6
2261 Male, age 18, unknown 24.3
1796 Male, age 53, unknown 24.0
1895 Male, age 76, right hemisphere 23.6
1913 Female, age 42, unknown 23.2
1839 Male, age 51, unknown 23.1
2587 Male, age 74, left hemisphere 20.6
2087 Female, age 72, unknown 19.6
Ventral tegmental area
nTPM: 22.8
1942 Male, age 51, unknown 26.8
2218 Male, age 76, both hemispheres 24.2
1915 Female, age 42, unknown 23.6
2223 Female, age 72, unknown 23.5
2021 Male, age 53, unknown 20.5
2410 Female, age 72, unknown 18.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 139

Max nTPM: 20.0
Min nTPM: 2.9
Std nTPM: 3.1
Median nTPM: 7.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 17.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 16.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 15.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 15.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 14.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 13.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

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