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SLC25A6
HPA
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  • SLC25A6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:238.2 nTPM
FANTOM5:354.5 Scaled Tags Per Million
Pig:576.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA071684
Glial cells Low
Neuronal cells Low

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 238.2
Samples: 246

Max nTPM: 471.5
Min nTPM: 91.6
Std nTPM: 62.4
Median nTPM: 233.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 471.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 446.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 436.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 421.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 387.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 375.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 372.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 361.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 357.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 348.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 347.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 346.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 344.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 343.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 343.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 342.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 339.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 338.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 334.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 327.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 324.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 322.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 317.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 316.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 315.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 314.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 313.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 312.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 311.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 311.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 310.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 308.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 307.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 304.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 303.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 302.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 300.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 299.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 298.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 297.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 296.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 295.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 295.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 295.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 294.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 288.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 287.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 287.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 286.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 285.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 285.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 284.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 284.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 283.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 283.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 280.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 279.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 278.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 277.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 275.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 273.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 272.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 271.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 271.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 270.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 269.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 269.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 269.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 268.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 268.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 268.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 266.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 265.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 264.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 263.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 262.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 262.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 262.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 261.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 260.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 256.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 255.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 255.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 255.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 255.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 254.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 253.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 251.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 250.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 249.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 249.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 249.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 249.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 246.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 246.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 246.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 245.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 245.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 245.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 244.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 243.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 243.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 243.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 242.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 242.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 241.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 240.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 239.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 239.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 238.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 238.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 237.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 236.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 236.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 236.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 235.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 235.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 234.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 234.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 234.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 234.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 234.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 233.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 233.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 232.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 231.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 231.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 230.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 229.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 229.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 228.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 228.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 228.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 227.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 227.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 226.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 226.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 226.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 226.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 226.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 225.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 224.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 224.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 221.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 221.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 220.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 219.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 219.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 218.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 218.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 217.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 216.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 216.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 215.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 215.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 214.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 213.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 213.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 213.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 212.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 211.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 210.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 210.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 209.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 208.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 208.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 208.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 208.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 208.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 208.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 208.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 208.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 206.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 205.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 205.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 204.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 204.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 203.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 202.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 201.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 201.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 200.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 198.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 197.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 197.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 197.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 196.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 196.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 195.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 194.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 193.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 193.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 193.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 192.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 192.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 191.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 191.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 190.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 190.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 190.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 190.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 189.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 189.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 188.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 187.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 186.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 184.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 181.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 180.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 179.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 179.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 177.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 176.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 175.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 175.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 175.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 174.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 172.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 171.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 169.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 166.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 166.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 161.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 161.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 159.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 158.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 156.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 154.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 153.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 148.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 146.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 145.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 141.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 136.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 133.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 130.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 128.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 125.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 124.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 116.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 114.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 113.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 111.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 98.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 91.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 354.5
FF:10164-103B2 76 years, female 354.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

576.8
Pig sample Sample description nTPM
Caudate
nTPM: 576.8
Samples: 4

Max nTPM: 701.6
Min nTPM: 479.9
Sample A Female 479.9
Sample B Female 620.2
Sample C Male 701.6
Sample D Male 505.5

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