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SLC25A6
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:377.1 nTPM
HPA:377.1 nTPM
GTEx:275.6 nTPM
FANTOM5:0.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA071684
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.1
overview
Male, age 65
Small intestine sample 232
nTPM: 486.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 388.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 328
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 305.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 275.6
Samples: 187

Max nTPM: 539.6
Min nTPM: 116.5
Std nTPM: 56.1
Median nTPM: 268.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 539.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 437.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 426.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 413.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 411.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 399.9
GTEX-1192X-2526-SM-59868 50-59 years, male 396.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 395.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 383.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 381.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 379.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 366.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 364.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 361.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 356.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 356.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 355.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 350.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 349.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 346.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 345.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 343.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 342.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 342.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 341.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 340.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 334.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 333.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 332.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 330.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 328.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 321.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 320.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 320.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 319.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 316.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 314.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 313.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 309.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 308.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 305.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 305.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 303.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 303.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 302.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 302.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 301.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 301.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 301.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 300.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 300.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 300.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 299.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 297.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 293.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 293.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 292.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 292.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 290.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 290.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 290.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 289.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 289.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 288.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 288.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 288.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 288.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 285.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 283.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 281.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 281.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 280.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 280.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 280.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 280.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 280.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 279.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 279.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 278.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 278.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 276.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 276.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 275.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 275.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 274.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 274.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 274.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 274.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 274.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 274.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 273.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 269.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 269.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 268.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 268.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 267.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 267.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 266.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 265.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 264.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 263.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 262.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 262.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 262.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 262.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 261.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 261.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 260.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 259.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 258.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 258.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 258.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 258.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 257.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 256.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 254.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 253.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 253.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 252.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 252.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 251.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 250.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 250.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 249.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 249.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 249.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 248.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 247.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 247.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 247.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 246.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 245.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 244.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 242.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 242.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 239.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 238.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 237.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 236.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 236.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 234.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 233.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 232.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 232.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 232.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 232.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 231.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 231.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 230.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 229.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 229.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 228.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 228.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 228.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 228.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 228.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 225.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 223.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 223.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 223.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 219.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 219.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 219.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 218.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 217.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 216.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 216.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 216.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 215.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 214.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 212.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 210.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 209.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 209.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 208.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 208.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 208.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 205.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 199.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 199.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 197.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 197.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 196.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 176.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 175.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 160.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 116.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 0.0
FF:10024-101D6 15,40,85 years, mixed 0.0

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