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CPT1C
HPA
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  • CPT1C
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CPT1C
Synonyms CATL1, CPT1P, CPTIC, FLJ23809
Gene descriptioni

Full gene name according to HGNC.

Carnitine palmitoyltransferase 1C
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.33
Chromosome location (bp) 49690898 - 49713731
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000169169 (version 109)
Entrez gene 126129
HGNC HGNC:18540
UniProt Q8TCG5 (UniProt - Evidence at protein level)
neXtProt NX_Q8TCG5
GeneCards CPT1C
Antibodypedia CPT1C antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Palmitoyl thioesterase specifically expressed in the endoplasmic reticulum of neurons. Modulates the trafficking of the glutamate receptor, AMPAR, to plasma membrane through depalmitoylation of GRIA1 1. Also regulates AMPR trafficking through the regulation of SACM1L phosphatidylinositol-3-phosphatase activity by interaction in a malonyl-CoA dependent manner (By similarity). Binds malonyl-CoA and couples malonyl-CoA to ceramide levels, necessary for proper spine maturation and contributing to systemic energy homeostasis and appetite control 2. Binds to palmitoyl-CoA, but does not have carnitine palmitoyltransferase 1 catalytic activity or at very low levels 3, 4.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Acyltransferase, Hydrolase, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Fatty acid metabolism, Lipid metabolism
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the carnitine/choline acetyltransferase family. The encoded protein regulates the beta-oxidation and transport of long-chain fatty acids into mitochondria, and may play a role in the regulation of feeding behavior and whole-body energy homeostasis. Alternatively spliced transcript variants encoding multiple protein isoforms have been observed for this gene. [provided by RefSeq, Dec 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CPT1C-202
ENSP00000319343
ENST00000323446
Q8TCG5
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
A0A024QZE3
[Target identity:100%; Query identity:100%] Carnitine O-palmitoyltransferase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004095 [carnitine O-palmitoyltransferase activity]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005783 [endoplasmic reticulum]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006635 [fatty acid beta-oxidation]
GO:0009437 [carnitine metabolic process]
GO:0016020 [membrane]
GO:0016740 [transferase activity]
GO:0016746 [acyltransferase activity]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0042995 [cell projection]
GO:0045202 [synapse]
Show all
803 aa
91 kDa
No 2
CPT1C-203
ENSP00000376303
ENST00000392518
Q8TCG5
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
A0A024QZE3
[Target identity:100%; Query identity:100%] Carnitine O-palmitoyltransferase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004095 [carnitine O-palmitoyltransferase activity]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005783 [endoplasmic reticulum]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006635 [fatty acid beta-oxidation]
GO:0009437 [carnitine metabolic process]
GO:0016020 [membrane]
GO:0016740 [transferase activity]
GO:0016746 [acyltransferase activity]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0042995 [cell projection]
GO:0045202 [synapse]
Show all
803 aa
91 kDa
No 2
CPT1C-204
ENSP00000384465
ENST00000405931
Q8TCG5
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
A0A024QZI3
[Target identity:100%; Query identity:100%] Carnitine O-palmitoyltransferase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004095 [carnitine O-palmitoyltransferase activity]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005783 [endoplasmic reticulum]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006635 [fatty acid beta-oxidation]
GO:0009437 [carnitine metabolic process]
GO:0016020 [membrane]
GO:0016740 [transferase activity]
GO:0016746 [acyltransferase activity]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0042995 [cell projection]
GO:0045202 [synapse]
Show all
792 aa
89.7 kDa
No 2
CPT1C-207
ENSP00000471579
ENST00000594587
M0R115
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016746 [acyltransferase activity]
Show all
177 aa
19.9 kDa
No 2
CPT1C-208
ENSP00000472579
ENST00000595031
M0R2H6
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016740 [transferase activity]
GO:0016746 [acyltransferase activity]
Show all
336 aa
37.2 kDa
No 0
CPT1C-211
ENSP00000472453
ENST00000595969
M0R2B9
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
130 aa
14.4 kDa
No 1
CPT1C-214
ENSP00000471841
ENST00000597099
M0R1F9
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016746 [acyltransferase activity]
Show all
81 aa
9 kDa
No 0
CPT1C-217
ENSP00000473028
ENST00000598293
Q8TCG5
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
A0A024QZE3
[Target identity:100%; Query identity:100%] Carnitine O-palmitoyltransferase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004095 [carnitine O-palmitoyltransferase activity]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006635 [fatty acid beta-oxidation]
GO:0009437 [carnitine metabolic process]
GO:0016020 [membrane]
GO:0016740 [transferase activity]
GO:0016746 [acyltransferase activity]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0032281 [AMPA glutamate receptor complex]
GO:0042995 [cell projection]
GO:0045202 [synapse]
GO:0098794 [postsynapse]
GO:0098978 [glutamatergic synapse]
GO:0099072 [regulation of postsynaptic membrane neurotransmitter receptor levels]
Show all
803 aa
91 kDa
No 2
CPT1C-218
ENSP00000470221
ENST00000598396
M0QZ13
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004095 [carnitine O-palmitoyltransferase activity]
GO:0006635 [fatty acid beta-oxidation]
GO:0016020 [membrane]
GO:0016746 [acyltransferase activity]
Show all
257 aa
29.7 kDa
No 2
CPT1C-224
ENSP00000472828
ENST00000602019
M0R2V3
[Direct mapping] Carnitine O-palmitoyltransferase 1, brain isoform
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
95 aa
10.8 kDa
No 1

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