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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:246.0 nTPM
FANTOM5:92.9 Scaled Tags Per Million
Pig:135.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046847
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 246.0
Samples: 246

Max nTPM: 751.6
Min nTPM: 1.4
Std nTPM: 182.0
Median nTPM: 222.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 751.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 751.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 733.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 706.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 704.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 664.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 614.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 610.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 589.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 586.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 580.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 564.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 553.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 545.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 535.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 526.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 521.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 520.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 515.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 514.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 498.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 498.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 497.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 485.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 484.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 484.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 475.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 474.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 470.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 470.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 465.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 463.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 461.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 460.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 458.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 458.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 455.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 449.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 445.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 439.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 431.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 431.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 429.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 428.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 427.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 426.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 421.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 420.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 418.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 414.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 412.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 408.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 407.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 407.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 406.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 405.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 405.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 404.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 402.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 402.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 401.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 401.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 395.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 391.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 389.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 383.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 377.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 375.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 373.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 370.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 368.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 365.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 360.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 359.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 354.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 353.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 350.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 349.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 345.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 342.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 340.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 340.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 337.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 326.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 326.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 325.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 322.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 319.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 319.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 317.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 316.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 314.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 312.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 312.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 309.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 296.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 294.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 285.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 285.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 280.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 279.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 275.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 273.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 269.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 267.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 266.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 266.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 265.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 265.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 263.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 262.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 262.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 258.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 252.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 250.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 250.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 243.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 242.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 233.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 233.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 230.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 225.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 223.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 221.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 220.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 219.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 214.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 212.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 207.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 200.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 196.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 193.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 186.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 183.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 181.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 177.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 173.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 172.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 171.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 171.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 170.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 168.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 168.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 160.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 160.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 159.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 158.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 154.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 153.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 151.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 149.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 146.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 146.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 145.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 145.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 142.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 141.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 140.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 140.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 138.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 135.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 133.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 132.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 129.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 125.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 125.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 109.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 107.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 106.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 101.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 97.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 97.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 95.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 94.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 94.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 94.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 93.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 84.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 80.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 80.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 75.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 74.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 73.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 72.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 72.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 70.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 69.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 68.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 65.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 60.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 60.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 58.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 55.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 54.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 53.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 53.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 52.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 51.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 49.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 48.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 47.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 46.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 45.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 44.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 44.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 43.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 42.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 41.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 40.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 39.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 39.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 38.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 38.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 38.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 37.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 36.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 35.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 35.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 33.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 32.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 31.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 26.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 26.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 26.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 26.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 25.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 22.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 21.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 19.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 17.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 17.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 16.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 16.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 15.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 13.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 13.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 12.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 11.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 92.9
FF:10164-103B2 76 years, female 92.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.1
Pig sample Sample description nTPM
Caudate
nTPM: 135.1
Samples: 4

Max nTPM: 168.5
Min nTPM: 100.1
Sample A Female 100.1
Sample B Female 145.8
Sample C Male 168.5
Sample D Male 126.0

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