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SIN3A
HPA
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  • SIN3A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SIN3A
Synonyms DKFZP434K2235, KIAA0700
Gene descriptioni

Full gene name according to HGNC.

SIN3 transcription regulator family member A
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Human disease related genes
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q24.2
Chromosome location (bp) 75369379 - 75455842
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

13
Ensembl ENSG00000169375 (version 109)
Entrez gene 25942
HGNC HGNC:19353
UniProt Q96ST3 (UniProt - Evidence at protein level)
neXtProt NX_Q96ST3
GeneCards SIN3A
Antibodypedia SIN3A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Acts as a transcriptional repressor. Corepressor for REST. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Also interacts with MXD1-MAX heterodimers to repress transcription by tethering SIN3A to DNA. Acts cooperatively with OGT to repress transcription in parallel with histone deacetylation. Involved in the control of the circadian rhythms. Required for the transcriptional repression of circadian target genes, such as PER1, mediated by the large PER complex through histone deacetylation. Cooperates with FOXK1 to regulate cell cycle progression probably by repressing cell cycle inhibitor genes expression (By similarity). Required for cortical neuron differentiation and callosal axon elongation (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Repressor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Biological rhythms, Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a transcriptional regulatory protein. It contains paired amphipathic helix (PAH) domains, which are important for protein-protein interactions and may mediate repression by the Mad-Max complex. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SIN3A-201
ENSP00000353622
ENST00000360439
Q96ST3
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Disease related genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0002218 [activation of innate immune response]
GO:0002230 [positive regulation of defense response to virus by host]
GO:0003713 [transcription coactivator activity]
GO:0003714 [transcription corepressor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006476 [protein deacetylation]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0021895 [cerebral cortex neuron differentiation]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0030516 [regulation of axon extension]
GO:0031453 [positive regulation of heterochromatin formation]
GO:0042754 [negative regulation of circadian rhythm]
GO:0045666 [positive regulation of neuron differentiation]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048511 [rhythmic process]
GO:0061629 [RNA polymerase II-specific DNA-binding transcription factor binding]
GO:0140416 [transcription regulator inhibitor activity]
GO:1900181 [negative regulation of protein localization to nucleus]
GO:1901675 [negative regulation of histone H3-K27 acetylation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:2000678 [negative regulation of transcription regulatory region DNA binding]
Show all
1273 aa
145.2 kDa
No 0
SIN3A-202
ENSP00000378402
ENST00000394947
Q96ST3
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Disease related genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000776 [kinetochore]
GO:0000785 [chromatin]
GO:0001701 [in utero embryonic development]
GO:0002218 [activation of innate immune response]
GO:0002230 [positive regulation of defense response to virus by host]
GO:0002244 [hematopoietic progenitor cell differentiation]
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0003714 [transcription corepressor activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005667 [transcription regulator complex]
GO:0005730 [nucleolus]
GO:0006260 [DNA replication]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006476 [protein deacetylation]
GO:0007568 [aging]
GO:0008104 [protein localization]
GO:0010243 [response to organonitrogen compound]
GO:0010817 [regulation of hormone levels]
GO:0010971 [positive regulation of G2/M transition of mitotic cell cycle]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0017053 [transcription repressor complex]
GO:0021895 [cerebral cortex neuron differentiation]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0030516 [regulation of axon extension]
GO:0031453 [positive regulation of heterochromatin formation]
GO:0032991 [protein-containing complex]
GO:0042754 [negative regulation of circadian rhythm]
GO:0043066 [negative regulation of apoptotic process]
GO:0043619 [regulation of transcription from RNA polymerase II promoter in response to oxidative stress]
GO:0044877 [protein-containing complex binding]
GO:0045666 [positive regulation of neuron differentiation]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048511 [rhythmic process]
GO:0051595 [response to methylglyoxal]
GO:0061629 [RNA polymerase II-specific DNA-binding transcription factor binding]
GO:0071333 [cellular response to glucose stimulus]
GO:0140416 [transcription regulator inhibitor activity]
GO:1900181 [negative regulation of protein localization to nucleus]
GO:1901675 [negative regulation of histone H3-K27 acetylation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:1903351 [cellular response to dopamine]
GO:2000678 [negative regulation of transcription regulatory region DNA binding]
Show all
1273 aa
145.2 kDa
No 0
SIN3A-203
ENSP00000378403
ENST00000394949
Q96ST3
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Disease related genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0002218 [activation of innate immune response]
GO:0002230 [positive regulation of defense response to virus by host]
GO:0003713 [transcription coactivator activity]
GO:0003714 [transcription corepressor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006476 [protein deacetylation]
GO:0016575 [histone deacetylation]
GO:0016580 [Sin3 complex]
GO:0021895 [cerebral cortex neuron differentiation]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0030516 [regulation of axon extension]
GO:0031453 [positive regulation of heterochromatin formation]
GO:0042754 [negative regulation of circadian rhythm]
GO:0045666 [positive regulation of neuron differentiation]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048511 [rhythmic process]
GO:0061629 [RNA polymerase II-specific DNA-binding transcription factor binding]
GO:0140416 [transcription regulator inhibitor activity]
GO:1900181 [negative regulation of protein localization to nucleus]
GO:1901675 [negative regulation of histone H3-K27 acetylation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
GO:2000678 [negative regulation of transcription regulatory region DNA binding]
Show all
1273 aa
145.2 kDa
No 0
SIN3A-204
ENSP00000455072
ENST00000562776
H3BNZ3
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0005654 [nucleoplasm]
GO:0016580 [Sin3 complex]
Show all
142 aa
15.4 kDa
No 0
SIN3A-205
ENSP00000455204
ENST00000564778
H3BP90
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of DNA-templated transcription]
GO:0016580 [Sin3 complex]
GO:0045892 [negative regulation of DNA-templated transcription]
Show all
1273 aa
145.2 kDa
No 0
SIN3A-206
ENSP00000454296
ENST00000565264
H3BMA2
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0006355 [regulation of DNA-templated transcription]
GO:0016580 [Sin3 complex]
Show all
1273 aa
145.2 kDa
No 0
SIN3A-208
ENSP00000455834
ENST00000567289
H3BQL7
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0016580 [Sin3 complex]
Show all
156 aa
17.1 kDa
No 0
SIN3A-209
ENSP00000456997
ENST00000568190
H3BT34
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
Show all
98 aa
10.5 kDa
No 0
SIN3A-210
ENSP00000455644
ENST00000568309
H3BQ76
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
Show all
107 aa
11.4 kDa
No 0
SIN3A-211
ENSP00000454750
ENST00000568431
H3BNA0
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0005654 [nucleoplasm]
GO:0016580 [Sin3 complex]
Show all
130 aa
14 kDa
No 0
SIN3A-214
ENSP00000455662
ENST00000570115
H3BQ88
[Direct mapping] Paired amphipathic helix protein Sin3a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0005654 [nucleoplasm]
GO:0016580 [Sin3 complex]
Show all
123 aa
13.2 kDa
No 0
SIN3A-219
ENSP00000515832
ENST00000704310
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0006355 [regulation of DNA-templated transcription]
GO:0016580 [Sin3 complex]
Show all
1278 aa
145.8 kDa
No 0
SIN3A-221
ENSP00000515834
ENST00000704312
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Other congenital disorders
   Chromosomal abnormalities
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714 [transcription corepressor activity]
GO:0006355 [regulation of DNA-templated transcription]
GO:0016580 [Sin3 complex]
Show all
1273 aa
145.2 kDa
No 0

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