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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1877.6 nTPM
GTEx:1877.6 nTPM
FANTOM5:0.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB011237
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1877.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1877.6
Samples: 156

Max nTPM: 11431.6
Min nTPM: 0.0
Std nTPM: 2286.0
Median nTPM: 1085.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 11431.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 11291.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 8560.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 7547.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 6877.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 6727.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 6514.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 6447.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 6224.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 5632.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 5461.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 5457.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 5451.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 5402.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 5399.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 5296.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 4866.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 4829.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4823.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 4823.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 4783.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 4681.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 4488.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 4420.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 4214.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 4207.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 4039.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 4000.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 3801.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3639.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3566.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3541.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 3488.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 3469.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 3319.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 3242.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 3193.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3107.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2982.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2956.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2926.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2893.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2884.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2873.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2789.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2763.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2650.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2649.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2589.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2572.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2570.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2555.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2545.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2326.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2323.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2203.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2049.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1899.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1875.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1874.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1787.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1721.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1631.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1605.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1574.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1534.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1458.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1427.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1371.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1309.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1308.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1307.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1276.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1263.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1260.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1193.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1146.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1102.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1067.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1022.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1003.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 973.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 888.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 803.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 800.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 752.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 713.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 710.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 577.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 558.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 460.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 373.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 369.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 316.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 278.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 268.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 259.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 220.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 204.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 157.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 133.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 116.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 115.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 65.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 47.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 44.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 40.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 31.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 25.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 25.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 18.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 18.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 12.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 10.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 10.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 9.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 7.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 7.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 7.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 7.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 6.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 5.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 4.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 3.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 3.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 2.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 0.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 0.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 0.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 0.0
FF:10204-103F6 68 years, female 0.0

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