MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA Brain:34.7 nTPM
GTEx:38.8 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.1
2586 Male, age 75, left hemisphere 31.7
2411 Female, age 72, unknown 30.0
1827 Male, age 72, unknown 27.6
1830 Male, age 51, unknown 27.5
2828 Female, age 72, unknown 25.5
2219 Male, age 76, both hemispheres 23.4
1870 Female, age 42, unknown 22.9
2666 Male, age 74, left hemisphere 22.2
1833 Male, age 53, unknown 21.7
2019 Male, age 18, unknown 18.2
Dorsal raphe nucleus
nTPM: 25.0
1828 Male, age 53, unknown 31.2
2750 Male, age 76, both hemispheres 29.6
2047 Male, age 72, unknown 24.6
2016 Female, age 72, unknown 20.1
2298 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 20.1
2097 Female, age 72, unknown 23.1
2849 Male, age 72, unknown 22.8
1848 Female, age 42, unknown 17.3
1890 Male, age 53, unknown 17.3
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Periaquaductal grey, anterior
nTPM: 18.4
1947 Male, age 18, unknown 23.8
1795 Male, age 51, unknown 19.4
2502 Female, age 75, unknown 11.9
Periaquaductal grey, dorsal
nTPM: 18.5
2464 Female, age 72, unknown 21.4
1831 Male, age 72, unknown 19.8
2850 Male, age 76, both hemispheres 16.5
1840 Male, age 53, unknown 16.3
Periaquaductal grey, lateral
nTPM: 14.4
2053 Male, age 18, unknown 19.5
2140 Male, age 76, both hemispheres 16.6
2272 Male, age 74, both hemispheres 7.1
Pretectal area
nTPM: 28.3
1944 Female, age 72, unknown 40.9
2007 Male, age 72, unknown 36.8
1815 Male, age 53, unknown 36.1
1816 Male, age 51, unknown 35.1
2667 Female, age 75, unknown 33.5
1817 Female, age 42, unknown 29.6
2407 Male, age 75, both hemispheres 26.7
2224 Female, age 72, unknown 25.4
2825 Male, age 18, unknown 21.6
2316 Male, age 76, right hemisphere 18.5
2273 Male, age 74, both hemispheres 6.5
Red nucleus
nTPM: 21.0
2588 Male, age 74, left hemisphere 38.8
2725 Female, age 75, unknown 28.1
2584 Male, age 75, left hemisphere 26.1
2785 Male, age 18, unknown 24.3
1821 Female, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 19.0
1904 Male, age 53, unknown 18.2
2227 Male, age 72, unknown 16.7
2503 Female, age 72, unknown 16.5
1954 Female, age 42, unknown 16.0
1865 Male, age 51, unknown 13.4
2769 Male, age 72, unknown 11.6
Substantia nigra
nTPM: 34.7
2409 Female, age 72, unknown 68.5
1916 Female, age 42, unknown 47.9
1941 Male, age 53, unknown 38.5
1889 Female, age 72, unknown 37.5
1851 Male, age 51, unknown 35.3
2241 Male, age 72, unknown 29.2
2583 Male, age 75, right hemisphere 26.0
2665 Male, age 74, both hemispheres 23.4
2699 Male, age 18, unknown 22.9
2590 Female, age 75, unknown 18.1
Superior colliculus
nTPM: 21.3
2587 Male, age 74, left hemisphere 28.5
2668 Female, age 75, unknown 28.5
2087 Female, age 72, unknown 24.0
1796 Male, age 53, unknown 22.7
1995 Male, age 72, unknown 22.6
1895 Male, age 76, right hemisphere 22.5
1913 Female, age 42, unknown 21.9
2261 Male, age 18, unknown 19.2
1839 Male, age 51, unknown 17.6
2664 Male, age 75, both hemispheres 5.0
Ventral tegmental area
nTPM: 29.4
2223 Female, age 72, unknown 35.5
2218 Male, age 76, both hemispheres 34.5
2410 Female, age 72, unknown 31.2
1915 Female, age 42, unknown 29.7
1942 Male, age 51, unknown 26.5
2021 Male, age 53, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.8
Samples: 139

Max nTPM: 100.5
Min nTPM: 13.5
Std nTPM: 14.5
Median nTPM: 37.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 100.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 95.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 83.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 71.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 64.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 60.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 59.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 58.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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