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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:117.5 nTPM
HPA Brain:73.8 nTPM
GTEx:117.5 nTPM
FANTOM5:111.3 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:12.5 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.8
Sample id Sample description nTPM
Amygdala
nTPM: 73.8
2814 Male, age 76, right hemisphere 95.6
2514 Male, age 75, right hemisphere 76.7
2695 Female, age 67, right hemisphere 74.6
1987 Female, age 91, left hemisphere 61.8
2517 Female, age 94, left hemisphere 60.1
Basal amygdala
nTPM: 60.2
2609 Male, age 75, right hemisphere 86.5
1955 Male, age 76, both hemispheres 69.9
2243 Female, age 91, right hemisphere 69.1
2110 Male, age 80, left hemisphere 59.0
2685 Female, age 94, left hemisphere 47.0
2827 Female, age 67, right hemisphere 29.9
Central amygdala
nTPM: 65.6
1905 Male, age 76, both hemispheres 84.7
2515 Male, age 75, right hemisphere 71.9
2826 Female, age 94, left hemisphere 59.8
2239 Male, age 80, left hemisphere 59.1
2701 Female, age 91, right hemisphere 52.7
Corticomedial amygdala
nTPM: 57.7
2428 Male, age 75, right hemisphere 77.3
2240 Male, age 76, both hemispheres 65.5
2829 Male, age 80, left hemisphere 59.4
2429 Female, age 94, left hemisphere 52.1
2242 Female, age 91, right hemisphere 50.9
2535 Female, age 67, right hemisphere 40.8
Lateral amygdala
nTPM: 61.9
2516 Male, age 75, right hemisphere 86.9
1883 Male, age 76, both hemispheres 68.0
2255 Female, age 91, right hemisphere 60.3
2534 Female, age 94, left hemisphere 59.4
2256 Male, age 80, left hemisphere 55.5
2830 Female, age 67, right hemisphere 41.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 117.5
Samples: 152

Max nTPM: 296.0
Min nTPM: 45.1
Std nTPM: 47.5
Median nTPM: 108.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 296.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 270.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 266.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 248.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 240.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 238.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 235.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 224.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 210.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 206.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 197.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 190.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 183.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 181.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 175.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 173.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 173.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 167.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 167.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 165.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 165.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 164.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 164.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 164.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 160.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 152.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 151.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 150.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 149.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 146.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 143.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 143.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 143.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 143.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 141.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 141.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 139.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 138.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 137.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 137.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 136.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 135.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 132.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 129.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 127.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 127.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 126.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 125.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 124.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 124.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 123.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 122.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 122.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 118.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 117.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 117.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 114.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 114.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 113.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 111.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 111.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 109.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 109.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 108.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 107.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 106.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 105.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 105.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 105.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 104.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 103.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 101.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 100.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 100.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 100.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 99.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 98.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 97.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 96.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 95.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 95.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 93.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 93.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 92.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 91.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 90.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 85.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 85.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 84.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 84.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 84.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 84.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 84.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 81.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 80.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 79.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 78.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 78.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 77.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 77.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 75.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 74.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 73.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 72.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 72.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 71.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 71.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 70.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 70.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 67.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 66.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 65.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 61.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 61.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 60.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 60.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 59.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 57.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 55.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 52.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 51.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 45.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.3
FF:10151-102I7 76 years, female 111.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.9
Pig sample Sample description nTPM
Amygdala
nTPM: 28.9
Samples: 4

Max nTPM: 35.7
Min nTPM: 22.5
Sample A Female 35.7
Sample B Female 29.0
Sample C Male 28.2
Sample D Male 22.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 12.5
Samples: 4

Max nTPM: 16.6
Min nTPM: 8.8
Sample A Male 13.8
Sample B Male 8.8
Sample C Female 16.6
Sample D Female 10.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
68301993 Antisense, RP_041130_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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