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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:105.7 nTPM
HPA Brain:85.5 nTPM
GTEx:105.7 nTPM
FANTOM5:89.0 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:92.4 nTPM
Allen mouse:21.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.5
Sample id Sample description nTPM
Amygdala
nTPM: 85.5
2814 Male, age 76, right hemisphere 108.5
2514 Male, age 75, right hemisphere 95.9
2517 Female, age 94, left hemisphere 80.7
1987 Female, age 91, left hemisphere 79.9
2695 Female, age 67, right hemisphere 62.7
Basal amygdala
nTPM: 73.2
2609 Male, age 75, right hemisphere 80.1
2110 Male, age 80, left hemisphere 78.2
2685 Female, age 94, left hemisphere 77.6
1955 Male, age 76, both hemispheres 74.7
2243 Female, age 91, right hemisphere 73.8
2827 Female, age 67, right hemisphere 54.6
Central amygdala
nTPM: 75.6
1905 Male, age 76, both hemispheres 95.0
2826 Female, age 94, left hemisphere 82.8
2515 Male, age 75, right hemisphere 75.7
2701 Female, age 91, right hemisphere 62.3
2239 Male, age 80, left hemisphere 62.2
Corticomedial amygdala
nTPM: 77.1
2429 Female, age 94, left hemisphere 93.2
2428 Male, age 75, right hemisphere 89.3
2240 Male, age 76, both hemispheres 78.1
2829 Male, age 80, left hemisphere 77.1
2242 Female, age 91, right hemisphere 69.3
2535 Female, age 67, right hemisphere 55.4
Lateral amygdala
nTPM: 72.1
1883 Male, age 76, both hemispheres 99.1
2534 Female, age 94, left hemisphere 82.2
2516 Male, age 75, right hemisphere 77.6
2255 Female, age 91, right hemisphere 59.9
2256 Male, age 80, left hemisphere 59.4
2830 Female, age 67, right hemisphere 54.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 105.7
Samples: 152

Max nTPM: 431.8
Min nTPM: 39.5
Std nTPM: 41.7
Median nTPM: 97.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 431.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 227.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 215.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 200.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 172.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 165.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 164.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 161.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 158.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 158.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 152.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 150.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 148.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 147.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 146.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 144.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 144.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 141.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 139.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 137.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 137.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 128.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 128.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 127.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 126.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 125.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 125.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 124.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 124.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 123.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 122.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 122.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 120.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 119.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 119.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 119.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 117.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 116.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 114.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 114.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 112.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 110.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 108.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 108.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 107.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 106.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 106.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 105.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 105.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 103.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 103.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 102.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 101.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 101.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 101.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 100.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 98.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 97.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 97.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 97.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 97.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 96.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 95.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 95.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 94.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 91.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 89.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 88.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 87.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 87.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 87.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 84.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 83.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 82.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 82.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 81.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 81.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 81.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 80.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 80.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 79.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 78.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 78.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 78.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 78.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 77.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 77.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 75.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 74.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 74.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 72.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 71.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 70.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 70.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 69.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 69.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 69.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 69.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 66.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 66.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 64.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 63.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 62.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 61.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 57.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 56.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 51.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 47.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 39.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 89.0
FF:10151-102I7 76 years, female 89.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.9
Pig sample Sample description nTPM
Amygdala
nTPM: 39.0
Samples: 4

Max nTPM: 45.0
Min nTPM: 33.5
Sample A Female 45.0
Sample B Female 40.9
Sample C Male 36.4
Sample D Male 33.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 92.4
Samples: 4

Max nTPM: 96.3
Min nTPM: 82.3
Sample A Male 82.3
Sample B Male 95.5
Sample C Female 96.3
Sample D Female 95.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.8
2705 Antisense, RP_040604_02_A10, Mouse strain C57BL/6J (56 days, male) 21.8
2706 Antisense, RP_040604_02_A10, Mouse strain C57BL/6J (56 days, male) 15.9

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