HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:47.7 nTPM
HPA Brain:57.2 nTPM
GTEx:47.7 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:5.3 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043598Antibody HPA044150
Glial cells Not detectedLow
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 57.2
Sample id Sample description nTPM
Hippocampus
nTPM: 50.7
2529 Female, age 94, left hemisphere 56.7
2621 Female, age 67, right hemisphere 54.2
2148 Female, age 91, left hemisphere 52.3
1898 Male, age 80, left hemisphere 51.4
1911 Female, age 85, right hemisphere 45.6
1855 Male, age 76, left hemisphere 44.1
Dentate gyrus
nTPM: 52.4
2530 Female, age 94, left hemisphere 74.0
2010 Male, age 76, both hemispheres 54.5
2528 Male, age 74, both hemispheres 53.9
2246 Female, age 85, both hemispheres 49.9
2531 Female, age 67, both hemispheres 48.2
1927 Female, age 91, both hemispheres 33.8
Entorhinal gyrus
nTPM: 57.2
2117 Female, age 91, right hemisphere 75.2
2686 Male, age 75, right hemisphere 61.7
2613 Female, age 94, left hemisphere 54.5
2764 Male, age 80, right hemisphere 52.4
1787 Male, age 76, left hemisphere 51.5
1938 Female, age 85, left hemisphere 47.7
Hippocampus, CA1
nTPM: 41.9
2527 Male, age 74, both hemispheres 50.8
2082 Female, age 91, right hemisphere 49.7
1873 Female, age 85, both hemispheres 40.0
2749 Male, age 80, left hemisphere 35.8
2045 Male, age 76, both hemispheres 33.4
Hippocampus, CA2
nTPM: 51.0
1940 Female, age 85, left hemisphere 58.5
2113 Female, age 91, right hemisphere 57.2
1963 Male, age 80, left hemisphere 54.7
2437 Female, age 94, left hemisphere 53.0
2249 Male, age 74, both hemispheres 49.8
1892 Male, age 76, both hemispheres 32.5
Hippocampus, CA3
nTPM: 41.0
2861 Female, age 67, both hemispheres 46.8
1891 Female, age 85, both hemispheres 46.6
2436 Male, age 74, both hemispheres 45.7
2137 Male, age 80, left hemisphere 36.8
2620 Female, age 94, left hemisphere 35.7
1867 Male, age 76, both hemispheres 34.4
Parahippocampal cortex
nTPM: 47.4
2018 Male, age 76, both hemispheres 54.9
2692 Male, age 74, both hemispheres 54.8
2622 Female, age 67, right hemisphere 54.1
1990 Female, age 91, right hemisphere 50.3
2532 Female, age 72, left hemisphere 49.5
2245 Female, age 91, both hemispheres 46.5
1933 Female, age 85, both hemispheres 46.1
2250 Female, age 67, right hemisphere 43.1
1850 Male, age 80, both hemispheres 41.3
2693 Female, age 94, both hemispheres 33.4
Perirhinal gyrus
nTPM: 40.0
1794 Male, age 80, right hemisphere 41.8
2848 Male, age 76, right hemisphere 41.1
1841 Female, age 85, right hemisphere 40.6
1847 Female, age 91, left hemisphere 39.9
2521 Female, age 94, right hemisphere 36.4
Subiculum
nTPM: 56.2
2042 Male, age 76, both hemispheres 66.8
2729 Female, age 91, right hemisphere 60.2
2619 Male, age 74, both hemispheres 56.9
1977 Female, age 85, both hemispheres 52.5
2438 Female, age 94, left hemisphere 50.6
1901 Male, age 80, both hemispheres 50.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 47.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.7
Samples: 197

Max nTPM: 128.2
Min nTPM: 19.9
Std nTPM: 18.9
Median nTPM: 44.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 128.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 121.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 118.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 100.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 97.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 94.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 91.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 90.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 90.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 84.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 84.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.9
FF:10153-102I9 76 years, female 89.1
FF:10169-103B7 60 years, female 46.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 46.0
Pig sample Sample description nTPM
Subiculum
nTPM: 46.0
Samples: 4

Max nTPM: 52.4
Min nTPM: 39.1
Sample A Female 52.4
Sample B Female 39.1
Sample C Male 45.4
Sample D Male 47.0
Dorsal hippocampus
nTPM: 28.8
Samples: 4

Max nTPM: 33.9
Min nTPM: 19.4
Sample A Female 33.9
Sample B Female 29.5
Sample C Male 32.2
Sample D Male 19.4
Entorhinal cortex
nTPM: 45.0
Samples: 4

Max nTPM: 55.1
Min nTPM: 35.0
Sample A Female 55.1
Sample B Female 36.3
Sample C Male 53.5
Sample D Male 35.0
Ventral hippocampus
nTPM: 38.3
Samples: 4

Max nTPM: 54.4
Min nTPM: 29.6
Sample A Female 37.9
Sample B Female 29.6
Sample C Male 54.4
Sample D Male 31.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 5.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.3
Sample A Male 5.2
Sample B Male 4.3
Sample C Female 4.4
Sample D Female 4.8
Hippocampal formation
nTPM: 5.3
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 5.2
Sample C Female 4.7
Sample D Female 6.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68745179 Antisense, RP_050210_01_D06, Mouse strain C57BL/6J (56 days, male) 0.4

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