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HPA
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  • SUMMARY

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  • BRAIN

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  • SLN
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLN
Synonyms MGC12301, MGC125854, MGC125855
Gene descriptioni

Full gene name according to HGNC.

Sarcolipin
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q22.3
Chromosome location (bp) 107707378 - 107719693
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000170290 (version 109)
Entrez gene 6588
HGNC HGNC:11089
UniProt O00631 (UniProt - Evidence at protein level)
neXtProt NX_O00631
GeneCards SLN
Antibodypedia SLN antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Reversibly inhibits the activity of ATP2A1 and ATP2A2 in sarcoplasmic reticulum by decreasing the apparent affinity of the ATPase for Ca(2+). Modulates calcium re-uptake during muscle relaxation and plays an important role in calcium homeostasis in muscle. Required for muscle-based, non-shivering thermogenesis (By similarity).... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Sarcoplasmic reticulum Ca(2+)-ATPases are transmembrane proteins that catalyze the ATP-dependent transport of Ca(2+) from the cytosol into the lumen of the sarcoplasmic reticulum in muscle cells. This gene encodes a small proteolipid that regulates several sarcoplasmic reticulum Ca(2+)-ATPases. The transmembrane protein interacts with Ca(2+)-ATPases and reduces the accumulation of Ca(2+) in the sarcoplasmic reticulum without affecting the rate of ATP hydrolysis. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLN-201
ENSP00000304707
ENST00000305991
O00631
[Direct mapping] Sarcolipin
Show all
A0A158RFT9
[Target identity:100%; Query identity:100%] Sarcolipin
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004857 [enzyme inhibitor activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006816 [calcium ion transport]
GO:0016020 [membrane]
GO:0016529 [sarcoplasmic reticulum]
GO:0030234 [enzyme regulator activity]
GO:0033017 [sarcoplasmic reticulum membrane]
GO:0043086 [negative regulation of catalytic activity]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0051117 [ATPase binding]
GO:0051924 [regulation of calcium ion transport]
GO:0070296 [sarcoplasmic reticulum calcium ion transport]
GO:0090281 [negative regulation of calcium ion import]
GO:0120162 [positive regulation of cold-induced thermogenesis]
GO:1901020 [negative regulation of calcium ion transmembrane transporter activity]
GO:1901077 [regulation of relaxation of muscle]
GO:1901877 [negative regulation of calcium ion binding]
GO:1901881 [positive regulation of protein depolymerization]
GO:1901894 [regulation of ATPase-coupled calcium transmembrane transporter activity]
GO:1901895 [negative regulation of ATPase-coupled calcium transmembrane transporter activity]
Show all
31 aa
3.8 kDa
No 1
SLN-202
ENSP00000434189
ENST00000525934
O00631
[Direct mapping] Sarcolipin
Show all
A0A158RFT9
[Target identity:100%; Query identity:100%] Sarcolipin
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004857 [enzyme inhibitor activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006816 [calcium ion transport]
GO:0016020 [membrane]
GO:0016529 [sarcoplasmic reticulum]
GO:0030234 [enzyme regulator activity]
GO:0033017 [sarcoplasmic reticulum membrane]
GO:0043086 [negative regulation of catalytic activity]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0051117 [ATPase binding]
GO:0051924 [regulation of calcium ion transport]
GO:0070296 [sarcoplasmic reticulum calcium ion transport]
GO:0090281 [negative regulation of calcium ion import]
GO:0120162 [positive regulation of cold-induced thermogenesis]
GO:1901020 [negative regulation of calcium ion transmembrane transporter activity]
GO:1901077 [regulation of relaxation of muscle]
GO:1901877 [negative regulation of calcium ion binding]
GO:1901881 [positive regulation of protein depolymerization]
GO:1901894 [regulation of ATPase-coupled calcium transmembrane transporter activity]
GO:1901895 [negative regulation of ATPase-coupled calcium transmembrane transporter activity]
Show all
31 aa
3.8 kDa
No 1
SLN-203
ENSP00000435380
ENST00000531293
O00631
[Direct mapping] Sarcolipin
Show all
A0A158RFT9
[Target identity:100%; Query identity:100%] Sarcolipin
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004857 [enzyme inhibitor activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006816 [calcium ion transport]
GO:0016020 [membrane]
GO:0016529 [sarcoplasmic reticulum]
GO:0030234 [enzyme regulator activity]
GO:0033017 [sarcoplasmic reticulum membrane]
GO:0043086 [negative regulation of catalytic activity]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0051117 [ATPase binding]
GO:0051924 [regulation of calcium ion transport]
GO:0070296 [sarcoplasmic reticulum calcium ion transport]
GO:0090281 [negative regulation of calcium ion import]
GO:0120162 [positive regulation of cold-induced thermogenesis]
GO:1901020 [negative regulation of calcium ion transmembrane transporter activity]
GO:1901077 [regulation of relaxation of muscle]
GO:1901877 [negative regulation of calcium ion binding]
GO:1901881 [positive regulation of protein depolymerization]
GO:1901894 [regulation of ATPase-coupled calcium transmembrane transporter activity]
GO:1901895 [negative regulation of ATPase-coupled calcium transmembrane transporter activity]
Show all
31 aa
3.8 kDa
No 1

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