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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:482.8 nTPM
HPA:313.3 nTPM
GTEx:482.8 nTPM
FANTOM5:625.1 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.3
overview
Male, age 65
Small intestine sample 232
nTPM: 315
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 345.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 289.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 303.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

482.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 482.8
Samples: 187

Max nTPM: 785.8
Min nTPM: 294.1
Std nTPM: 80.8
Median nTPM: 475.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 785.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 777.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 711.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 711.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 662.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 656.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 641.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 636.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 636.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 623.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 613.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 606.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 602.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 600.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 595.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 593.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 592.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 591.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 584.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 583.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 582.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 580.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 579.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 575.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 572.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 572.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 571.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 566.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 566.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 566.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 564.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 558.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 558.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 558.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 556.9
GTEX-1192X-2526-SM-59868 50-59 years, male 554.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 551.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 549.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 543.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 534.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 533.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 527.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 525.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 524.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 522.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 521.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 521.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 519.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 518.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 518.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 517.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 517.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 516.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 514.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 514.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 512.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 510.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 510.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 508.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 507.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 506.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 506.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 504.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 504.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 504.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 503.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 503.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 502.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 501.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 497.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 496.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 496.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 494.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 493.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 493.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 490.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 488.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 487.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 487.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 487.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 486.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 486.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 480.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 480.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 479.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 478.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 476.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 476.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 476.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 476.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 476.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 476.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 476.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 475.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 474.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 473.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 472.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 472.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 472.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 471.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 469.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 468.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 468.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 465.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 462.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 461.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 461.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 459.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 458.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 458.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 455.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 454.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 454.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 454.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 453.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 452.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 452.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 452.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 452.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 449.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 449.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 447.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 447.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 442.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 440.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 439.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 438.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 438.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 438.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 437.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 437.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 436.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 435.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 434.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 434.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 434.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 432.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 431.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 431.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 431.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 431.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 430.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 429.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 428.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 428.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 427.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 424.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 424.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 423.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 423.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 422.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 419.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 418.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 417.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 413.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 412.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 411.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 411.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 410.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 409.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 408.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 408.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 407.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 405.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 400.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 388.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 387.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 387.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 385.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 385.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 384.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 384.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 384.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 382.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 378.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 371.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 371.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 370.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 369.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 357.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 347.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 347.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 346.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 333.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 324.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 305.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 294.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

625.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 625.1
FF:10024-101D6 15,40,85 years, mixed 625.1

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