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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NFRKB
Synonyms DKFZp547B2013, INO80G
Gene descriptioni

Full gene name according to HGNC.

Nuclear factor related to kappaB binding protein
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q24.3
Chromosome location (bp) 129863636 - 129895590
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000170322 (version 109)
Entrez gene 4798
HGNC HGNC:7802
UniProt Q6P4R8 (UniProt - Evidence at protein level)
neXtProt NX_Q6P4R8
GeneCards NFRKB
Antibodypedia NFRKB antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds to the DNA consensus sequence 5'-GGGGAATCTCC-3'.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA recombination, DNA repair, Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables protease binding activity. Predicted to be involved in DNA recombination and DNA repair. Located in nucleoplasm. Colocalizes with Ino80 complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NFRKB-201
ENSP00000400476
ENST00000446488
Q6P4R8
[Direct mapping] Nuclear factor related to kappa-B-binding protein
Show all
A0A024R3K9
[Target identity:100%; Query identity:100%] Nuclear factor related to kappaB binding protein, isoform CRA_c
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000723 [telomere maintenance]
GO:0002020 [protease binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006275 [regulation of DNA replication]
GO:0006281 [DNA repair]
GO:0006282 [regulation of DNA repair]
GO:0006310 [DNA recombination]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0031011 [Ino80 complex]
GO:0033044 [regulation of chromosome organization]
GO:0045739 [positive regulation of DNA repair]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0045995 [regulation of embryonic development]
GO:0051726 [regulation of cell cycle]
GO:0060382 [regulation of DNA strand elongation]
GO:1904507 [positive regulation of telomere maintenance in response to DNA damage]
Show all
1299 aa
139 kDa
No 0
NFRKB-202
ENSP00000433572
ENST00000524746
Q6P4R8
[Direct mapping] Nuclear factor related to kappa-B-binding protein
Show all
A0A024R3K9
[Target identity:100%; Query identity:100%] Nuclear factor related to kappaB binding protein, isoform CRA_c
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000723 [telomere maintenance]
GO:0002020 [protease binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006275 [regulation of DNA replication]
GO:0006281 [DNA repair]
GO:0006282 [regulation of DNA repair]
GO:0006310 [DNA recombination]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0031011 [Ino80 complex]
GO:0033044 [regulation of chromosome organization]
GO:0045739 [positive regulation of DNA repair]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0045995 [regulation of embryonic development]
GO:0051726 [regulation of cell cycle]
GO:0060382 [regulation of DNA strand elongation]
GO:1904507 [positive regulation of telomere maintenance in response to DNA damage]
Show all
1299 aa
139 kDa
No 0
NFRKB-203
ENSP00000436926
ENST00000524794
Q6P4R8
[Direct mapping] Nuclear factor related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000723 [telomere maintenance]
GO:0002020 [protease binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006275 [regulation of DNA replication]
GO:0006281 [DNA repair]
GO:0006282 [regulation of DNA repair]
GO:0006310 [DNA recombination]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0031011 [Ino80 complex]
GO:0033044 [regulation of chromosome organization]
GO:0045739 [positive regulation of DNA repair]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0045995 [regulation of embryonic development]
GO:0051726 [regulation of cell cycle]
GO:0060382 [regulation of DNA strand elongation]
GO:1904507 [positive regulation of telomere maintenance in response to DNA damage]
Show all
1324 aa
141.9 kDa
No 0
NFRKB-204
ENSP00000431247
ENST00000526884
E9PM88
[Direct mapping] Nuclear factor-related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0031011 [Ino80 complex]
Show all
92 aa
10.4 kDa
No 0
NFRKB-205
ENSP00000432520
ENST00000526940
E9PQB0
[Direct mapping] Nuclear factor-related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0031011 [Ino80 complex]
Show all
122 aa
13.7 kDa
No 0
NFRKB-206
ENSP00000434326
ENST00000529319
E9PJG2
[Direct mapping] Nuclear factor-related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0031011 [Ino80 complex]
Show all
188 aa
21.9 kDa
No 0
NFRKB-208
ENSP00000433764
ENST00000531318
E9PJE1
[Direct mapping] Nuclear factor-related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
46 aa
5 kDa
No 0
NFRKB-209
ENSP00000432606
ENST00000531755
E9PQ59
[Direct mapping] Nuclear factor-related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0031011 [Ino80 complex]
Show all
987 aa
108.2 kDa
No 0
NFRKB-211
ENSP00000431854
ENST00000532225
E9PJG2
[Direct mapping] Nuclear factor-related to kappa-B-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0031011 [Ino80 complex]
Show all
188 aa
21.9 kDa
No 0
NFRKB-212
ENSP00000506850
ENST00000682444
Q6P4R8
[Direct mapping] Nuclear factor related to kappa-B-binding protein
Show all
A0A024R3K9
[Target identity:100%; Query identity:100%] Nuclear factor related to kappaB binding protein, isoform CRA_c
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000723 [telomere maintenance]
GO:0002020 [protease binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006275 [regulation of DNA replication]
GO:0006281 [DNA repair]
GO:0006282 [regulation of DNA repair]
GO:0006310 [DNA recombination]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0031011 [Ino80 complex]
GO:0033044 [regulation of chromosome organization]
GO:0045739 [positive regulation of DNA repair]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0045995 [regulation of embryonic development]
GO:0051726 [regulation of cell cycle]
GO:0060382 [regulation of DNA strand elongation]
GO:1904507 [positive regulation of telomere maintenance in response to DNA damage]
Show all
1299 aa
139 kDa
No 0

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