We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FOS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • FOS
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:188.0 nTPM
HPA Brain:173.0 nTPM
GTEx:188.0 nTPM
FANTOM5:555.2 Scaled Tags Per Million
Pig:324.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.8
2048 Male, age 55, midline 173.2
1981 Female, age 72, midline 158.0
2194 Female, age 79, both hemispheres 128.2
2816 Male, age 47, midline 106.2
2565 Male, age 75, midline 83.4
Cervical spinal cord, dorsal horn
nTPM: 164.8
1877 Male, age 55, unknown 209.7
2721 Male, age 90, both hemispheres 207.6
2069 Male, age 47, both hemispheres 178.9
2296 Male, age 66, both hemispheres 167.0
2173 Female, age 72, unknown 155.6
2297 Male, age 75, both hemispheres 69.7
Cervical spinal cord, ventral horn
nTPM: 173.0
2098 Female, age 72, unknown 505.1
2809 Male, age 90, both hemispheres 169.2
2068 Male, age 55, unknown 130.2
2295 Male, age 66, both hemispheres 94.9
2480 Male, age 75, both hemispheres 71.2
2820 Female, age 79, both hemispheres 67.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 188.0
Samples: 159

Max nTPM: 533.9
Min nTPM: 12.8
Std nTPM: 117.5
Median nTPM: 153.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 533.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 531.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 516.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 502.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 492.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 484.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 456.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 436.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 406.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 397.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 396.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 396.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 393.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 392.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 385.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 357.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 347.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 343.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 335.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 334.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 333.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 332.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 325.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 317.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 312.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 302.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 297.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 296.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 293.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 292.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 290.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 289.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 288.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 275.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 265.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 264.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 258.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 257.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 256.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 246.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 246.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 238.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 238.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 233.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 233.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 232.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 231.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 229.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 227.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 226.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 224.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 219.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 215.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 214.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 210.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 207.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 207.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 202.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 201.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 194.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 193.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 193.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 192.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 187.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 186.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 184.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 179.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 178.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 178.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 177.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 172.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 171.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 169.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 160.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 156.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 155.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 154.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 153.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 153.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 153.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 150.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 147.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 146.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 146.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 144.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 143.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 141.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 141.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 141.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 138.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 136.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 135.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 134.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 134.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 132.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 128.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 128.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 127.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 127.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 124.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 124.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 122.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 120.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 120.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 119.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 119.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 118.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 115.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 115.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 113.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 111.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 107.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 106.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 104.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 104.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 102.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 101.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 100.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 100.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 97.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 96.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 94.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 94.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 93.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 91.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 91.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 88.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 83.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 82.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 74.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 70.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 70.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 68.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 68.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 65.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 64.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 63.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 60.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 54.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 51.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 50.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 45.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 44.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 39.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 35.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 32.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 31.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 26.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 24.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 22.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 18.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 12.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

555.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 555.2
FF:10181-103D1 60 years, female 715.4
FF:10159-103A6 76 years, female 395.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 324.5
Samples: 4

Max nTPM: 742.9
Min nTPM: 70.3
Sample A Female 70.3
Sample B Female 307.1
Sample C Male 742.9
Sample D Male 177.5
Ventral spinal cord
nTPM: 151.0
Samples: 4

Max nTPM: 338.7
Min nTPM: 54.9
Sample A Female 54.9
Sample B Female 111.6
Sample C Male 338.7
Sample D Male 98.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org