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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:57.5 nTPM
HPA Brain:73.8 nTPM
GTEx:57.5 nTPM
FANTOM5:208.1 Scaled Tags Per Million
Pig:226.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.1
2048 Male, age 55, midline 84.7
1981 Female, age 72, midline 80.4
2565 Male, age 75, midline 67.7
2816 Male, age 47, midline 64.5
2194 Female, age 79, both hemispheres 58.3
Cervical spinal cord, dorsal horn
nTPM: 73.8
2173 Female, age 72, unknown 89.8
2296 Male, age 66, both hemispheres 86.3
2069 Male, age 47, both hemispheres 82.6
1877 Male, age 55, unknown 68.8
2721 Male, age 90, both hemispheres 59.5
2297 Male, age 75, both hemispheres 56.1
Cervical spinal cord, ventral horn
nTPM: 71.8
2098 Female, age 72, unknown 101.8
2809 Male, age 90, both hemispheres 85.3
2480 Male, age 75, both hemispheres 74.2
2295 Male, age 66, both hemispheres 62.6
2820 Female, age 79, both hemispheres 54.9
2068 Male, age 55, unknown 51.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 57.5
Samples: 159

Max nTPM: 94.4
Min nTPM: 32.9
Std nTPM: 11.9
Median nTPM: 56.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 94.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 94.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 94.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 85.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 81.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 80.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 80.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 80.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 76.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 76.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 74.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 74.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 74.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 73.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 72.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 72.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 72.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 71.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 70.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 70.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 70.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 69.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 68.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 67.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 66.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 66.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 64.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 64.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 64.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 64.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 64.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 63.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 63.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 62.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 62.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 62.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 62.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 62.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 61.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 61.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 61.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 61.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 61.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 61.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 60.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 60.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 60.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 60.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 60.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 59.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 59.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 59.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 59.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 59.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 58.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 58.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 58.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 58.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 58.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 58.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 58.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 57.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 57.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 57.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 57.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 57.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 57.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 57.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 56.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 56.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 56.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 56.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 56.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 55.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 55.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 55.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 55.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 55.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 55.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 55.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 54.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 54.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 54.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 53.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 53.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 53.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 53.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 53.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 53.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 52.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 52.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 52.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 52.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 52.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 52.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 51.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 51.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 51.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 51.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 51.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 51.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 51.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 50.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 50.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 50.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 50.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 50.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 50.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 50.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 50.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 50.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 49.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 49.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 49.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 49.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 49.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 49.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 49.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 49.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 48.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 48.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 48.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 48.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 47.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 47.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 47.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 47.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 46.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 46.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 46.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 45.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 45.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 43.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 42.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 42.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 42.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 42.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 39.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 38.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 38.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 38.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 38.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 38.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 35.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 33.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 33.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 32.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 208.1
FF:10159-103A6 76 years, female 221.6
FF:10181-103D1 60 years, female 194.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 214.1
Samples: 4

Max nTPM: 256.0
Min nTPM: 182.3
Sample A Female 182.3
Sample B Female 256.0
Sample C Male 224.8
Sample D Male 193.1
Ventral spinal cord
nTPM: 226.6
Samples: 4

Max nTPM: 272.1
Min nTPM: 190.2
Sample A Female 211.9
Sample B Female 232.0
Sample C Male 190.2
Sample D Male 272.1

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