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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

100.419
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:104.9 nTPM
FANTOM5:90.9 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:36.9 nTPM
Allen mouse:7.1 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA015770
Thalamus mean intensity 100.419
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 6.257
Parafascicular thalamic nucleus 1.091
Pregeniculate nucleus 11.179
Stria terminalis 100.419
Zona incerta 12.192
Anterodorsal thalamic nucleus 19.601
Reticular thalamic nucleus 0.966
Vental anterior thalamic nucleus -
Medial habenular nucleus 1.286
Laterodorsal thalamic area 28.852
Paraventricular thalamic nucleus 9.341
Central medial thalamic area 9.605
Ventral lateral thalamic area -
Ventral medial thalamic area 2.553
Lateral habenulal nucleus 10.771
Ventral posterior thalamus 5.218
Anterior pretactal nucleus 1.662
Retromammillary nucleus 8.032

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 67.8
2497 Male, age 66, unknown 86.2
2032 Female, age 42, unknown 60.3
2396 Male, age 61, right hemisphere 57.0
Centromedial thalamic nucleus
nTPM: 65.5
2401 Male, age 76, right hemisphere 73.0
2279 Female, age 85, left hemisphere 58.0
Habenula
nTPM: 99.1
2276 Male, age 66, unknown 116.9
1957 Male, age 80, both hemispheres 103.6
2252 Male, age 62, unknown 89.7
2203 Male, age 61, left hemisphere 86.3
Lateral geniculate body
nTPM: 71.2
2857 Male, age 74, right hemisphere 103.6
2399 Male, age 61, left hemisphere 75.0
2659 Male, age 66, unknown 72.0
2106 Female, age 67, right hemisphere 69.9
2035 Female, age 72, unknown 69.0
2841 Male, age 80, both hemispheres 64.3
1953 Male, age 62, unknown 59.0
2575 Female, age 94, right hemisphere 57.2
Lateral thalamic nuclei
nTPM: 86.4
1903 Male, age 76, left hemisphere 100.7
2573 Female, age 94, left hemisphere 88.4
2765 Female, age 67, both hemispheres 88.3
2577 Male, age 74, both hemispheres 87.0
2661 Female, age 72, unknown 67.6
Medial dorsal thalamic nucleus
nTPM: 97.5
2402 Female, age 67, both hemispheres 117.2
2039 Female, age 72, unknown 114.5
2576 Male, age 74, both hemispheres 113.2
2498 Male, age 66, unknown 113.0
2492 Male, age 75, right hemisphere 105.1
1810 Male, age 48, unknown 100.5
1971 Male, age 61, right hemisphere 99.9
2572 Female, age 94, right hemisphere 97.2
2026 Male, age 62, unknown 93.5
2283 Male, age 80, right hemisphere 93.2
1859 Male, age 76, both hemispheres 85.2
1930 Female, age 42, unknown 74.3
2660 Female, age 72, unknown 60.4
Medial geniculate body
nTPM: 87.0
2571 Male, age 75, right hemisphere 113.9
2650 Female, age 94, left hemisphere 87.4
2657 Male, age 74, right hemisphere 87.0
2207 Male, age 80, right hemisphere 82.1
1811 Female, age 42, unknown 81.1
2217 Female, age 72, unknown 79.1
2049 Male, age 76, both hemispheres 78.1
Nucleus reuniens
nTPM: 69.4
2212 Female, age 67, left hemisphere 96.1
2205 Male, age 80, left hemisphere 70.2
2210 Female, age 85, left hemisphere 42.0
Nucleus rhomboideus
nTPM: 84.4
2206 Male, age 80, both hemispheres 108.8
2213 Female, age 67, left hemisphere 95.3
2280 Female, age 85, left hemisphere 49.2
Posterior thalamic nucleus
nTPM: 104.9
2495 Female, age 67, right hemisphere 129.3
2655 Male, age 74, right hemisphere 110.3
2649 Female, age 94, both hemispheres 108.1
2266 Male, age 76, right hemisphere 71.9
Pulvinar
nTPM: 83.8
2499 Male, age 66, unknown 96.6
2496 Female, age 67, right hemisphere 95.4
2582 Female, age 72, unknown 94.8
2724 Male, age 74, right hemisphere 88.2
2214 Male, age 76, right hemisphere 83.4
1929 Male, age 48, unknown 82.8
1932 Male, age 80, right hemisphere 81.8
2398 Male, age 61, left hemisphere 76.8
1972 Male, age 62, unknown 71.3
1899 Female, age 42, unknown 66.5
Subthalamic nucleus
nTPM: 66.6
2406 Female, age 72, unknown 77.5
2124 Male, age 62, unknown 74.8
2779 Female, age 42, unknown 71.3
2216 Male, age 48, unknown 71.0
2282 Male, age 61, both hemispheres 65.5
2056 Female, age 72, unknown 63.1
2275 Male, age 66, unknown 62.9
2658 Male, age 74, both hemispheres 46.4
Ventral posterolateral thalamic nucleus
nTPM: 82.3
2197 Male, age 80, both hemispheres 108.7
2570 Male, age 75, right hemisphere 107.1
2578 Male, age 74, both hemispheres 79.4
2397 Male, age 61, right hemisphere 70.5
2740 Male, age 76, right hemisphere 65.0
2581 Female, age 72, unknown 62.8
Ventral posteromedial thalamic nucleus
nTPM: 90.8
2281 Male, age 75, right hemisphere 106.6
2758 Male, age 80, both hemispheres 101.4
2127 Male, age 76, right hemisphere 86.1
2202 Male, age 61, left hemisphere 83.1
2653 Male, age 74, both hemispheres 76.7
Ventral thalamic nuclei
nTPM: 77.9
2204 Male, age 80, both hemispheres 99.4
2291 Female, age 72, unknown 91.3
2652 Male, age 74, left hemisphere 80.6
1912 Female, age 42, unknown 79.3
2580 Male, age 66, unknown 79.0
2285 Male, age 62, unknown 77.5
1845 Male, age 48, unknown 68.7
1860 Male, age 76, both hemispheres 66.0
2858 Female, age 72, unknown 59.5
Zona incerta
nTPM: 64.9
2663 Female, age 72, unknown 98.3
2208 Male, age 80, right hemisphere 95.5
2403 Male, age 62, unknown 59.8
2215 Male, age 66, unknown 40.0
2822 Male, age 74, right hemisphere 31.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 90.9
FF:10154-103A1 76 years, female 90.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.9
Pig sample Sample description nTPM
Thalamus
nTPM: 32.0
Samples: 4

Max nTPM: 40.7
Min nTPM: 19.8
Sample A Female 40.7
Sample B Female 26.8
Sample C Male 40.5
Sample D Male 19.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 36.9
Samples: 4

Max nTPM: 37.7
Min nTPM: 35.3
Sample A Male 35.3
Sample B Male 37.4
Sample C Female 37.7
Sample D Female 37.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.1
68862030 Antisense, RP_050301_01_D04, Mouse strain C57BL/6J (56 days, male) 7.1

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