MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.8 nTPM
HPA Brain:57.2 nTPM
GTEx:7.8 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:78.0 nTPM
Allen mouse:9.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.0
1827 Male, age 72, unknown 53.1
2411 Female, age 72, unknown 49.0
2666 Male, age 74, left hemisphere 48.9
1870 Female, age 42, unknown 44.6
2586 Male, age 75, left hemisphere 43.8
2219 Male, age 76, both hemispheres 43.6
2019 Male, age 18, unknown 41.6
1830 Male, age 51, unknown 36.2
1833 Male, age 53, unknown 35.5
2828 Female, age 72, unknown 33.8
Dorsal raphe nucleus
nTPM: 50.4
2298 Female, age 72, unknown 69.0
2047 Male, age 72, unknown 54.8
2750 Male, age 76, both hemispheres 47.7
1828 Male, age 53, unknown 45.0
2016 Female, age 72, unknown 35.3
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 54.0
2849 Male, age 72, unknown 44.7
1848 Female, age 42, unknown 42.6
1890 Male, age 53, unknown 37.4
Median raphe nucleus
nTPM: 57.2
2220 Male, age 76, midline 57.2
Periaquaductal grey, anterior
nTPM: 47.9
1795 Male, age 51, unknown 52.9
1947 Male, age 18, unknown 47.2
2502 Female, age 75, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 46.8
1840 Male, age 53, unknown 60.3
2464 Female, age 72, unknown 43.9
2850 Male, age 76, both hemispheres 42.6
1831 Male, age 72, unknown 40.5
Periaquaductal grey, lateral
nTPM: 39.9
2053 Male, age 18, unknown 42.7
2140 Male, age 76, both hemispheres 40.4
2272 Male, age 74, both hemispheres 36.7
Pretectal area
nTPM: 45.5
2224 Female, age 72, unknown 58.8
1817 Female, age 42, unknown 56.9
2007 Male, age 72, unknown 55.7
1816 Male, age 51, unknown 50.9
1815 Male, age 53, unknown 47.8
2825 Male, age 18, unknown 45.1
1944 Female, age 72, unknown 42.3
2273 Male, age 74, both hemispheres 36.5
2316 Male, age 76, right hemisphere 36.0
2667 Female, age 75, unknown 35.8
2407 Male, age 75, both hemispheres 35.1
Red nucleus
nTPM: 30.8
2584 Male, age 75, left hemisphere 44.0
2785 Male, age 18, unknown 39.2
2588 Male, age 74, left hemisphere 35.0
2725 Female, age 75, unknown 33.4
1821 Female, age 72, unknown 33.1
1954 Female, age 42, unknown 28.8
2227 Male, age 72, unknown 27.8
2769 Male, age 72, unknown 27.3
2503 Female, age 72, unknown 27.1
2823 Male, age 76, right hemisphere 25.8
1904 Male, age 53, unknown 25.1
1865 Male, age 51, unknown 23.2
Substantia nigra
nTPM: 39.2
2241 Male, age 72, unknown 48.8
1916 Female, age 42, unknown 47.9
1889 Female, age 72, unknown 47.6
1941 Male, age 53, unknown 41.2
1851 Male, age 51, unknown 38.2
2409 Female, age 72, unknown 37.8
2590 Female, age 75, unknown 36.4
2665 Male, age 74, both hemispheres 34.0
2583 Male, age 75, right hemisphere 33.5
2699 Male, age 18, unknown 26.1
Superior colliculus
nTPM: 40.1
1796 Male, age 53, unknown 51.9
2668 Female, age 75, unknown 51.4
1839 Male, age 51, unknown 47.5
1895 Male, age 76, right hemisphere 43.3
2261 Male, age 18, unknown 42.6
2664 Male, age 75, both hemispheres 42.2
2087 Female, age 72, unknown 38.6
2587 Male, age 74, left hemisphere 32.7
1913 Female, age 42, unknown 27.1
1995 Male, age 72, unknown 24.1
Ventral tegmental area
nTPM: 42.6
1915 Female, age 42, unknown 43.8
2218 Male, age 76, both hemispheres 43.7
1942 Male, age 51, unknown 42.7
2410 Female, age 72, unknown 42.7
2223 Female, age 72, unknown 42.5
2021 Male, age 53, unknown 40.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.8
Samples: 139

Max nTPM: 21.5
Min nTPM: 2.5
Std nTPM: 3.6
Median nTPM: 6.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 17.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 15.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 15.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 14.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 14.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 19.1
Min nTPM: 5.3
Sample A Female 19.1
Sample B Female 9.3
Sample C Male 17.6
Sample D Male 5.3
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 20.6
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 13.1
Sample C Male 18.6
Sample D Male 20.6
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 17.0
Min nTPM: 11.4
Sample B Female 13.2
Sample C Male 17.0
Sample D Male 11.4
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 7.8
Sample A Female 16.7
Sample B Female 7.8
Sample C Male 13.8
Sample D Male 15.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 78.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 85.4
Min nTPM: 63.9
Sample A Male 63.9
Sample B Male 82.9
Sample C Female 85.4
Sample D Female 79.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.2
70596029 Antisense, RP_050628_03_H06, Mouse strain C57BL/6J (56 days, male) 11.1
74988755 Antisense, RP_060315_05_G11, Mouse strain C57BL/6J (56 days, male) 7.3

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