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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:396.1 nTPM
HPA Brain:25.2 nTPM
GTEx:396.1 nTPM
FANTOM5:195.6 Scaled Tags Per Million
Mouse:257.3 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.2
Sample id Sample description nTPM
Amygdala
nTPM: 19.1
2517 Female, age 94, left hemisphere 25.9
2695 Female, age 67, right hemisphere 23.5
2814 Male, age 76, right hemisphere 17.4
2514 Male, age 75, right hemisphere 17.2
1987 Female, age 91, left hemisphere 11.6
Basal amygdala
nTPM: 23.4
2827 Female, age 67, right hemisphere 35.4
2685 Female, age 94, left hemisphere 30.5
1955 Male, age 76, both hemispheres 24.5
2110 Male, age 80, left hemisphere 19.3
2609 Male, age 75, right hemisphere 16.6
2243 Female, age 91, right hemisphere 14.0
Central amygdala
nTPM: 24.1
2701 Female, age 91, right hemisphere 28.9
2515 Male, age 75, right hemisphere 27.9
2826 Female, age 94, left hemisphere 24.9
1905 Male, age 76, both hemispheres 19.6
2239 Male, age 80, left hemisphere 19.2
Corticomedial amygdala
nTPM: 22.8
2535 Female, age 67, right hemisphere 34.3
2240 Male, age 76, both hemispheres 26.1
2428 Male, age 75, right hemisphere 21.9
2242 Female, age 91, right hemisphere 21.3
2429 Female, age 94, left hemisphere 17.2
2829 Male, age 80, left hemisphere 15.8
Lateral amygdala
nTPM: 25.2
2255 Female, age 91, right hemisphere 35.0
2256 Male, age 80, left hemisphere 33.3
2830 Female, age 67, right hemisphere 24.8
1883 Male, age 76, both hemispheres 22.2
2534 Female, age 94, left hemisphere 18.6
2516 Male, age 75, right hemisphere 17.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

396.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 396.1
Samples: 152

Max nTPM: 1062.5
Min nTPM: 133.3
Std nTPM: 152.6
Median nTPM: 367.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1062.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1010.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 985.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 969.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 741.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 703.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 690.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 674.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 650.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 650.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 631.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 615.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 575.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 571.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 566.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 564.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 564.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 555.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 533.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 531.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 515.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 514.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 499.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 493.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 493.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 492.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 489.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 484.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 483.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 476.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 470.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 462.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 462.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 460.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 456.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 455.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 450.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 449.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 447.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 446.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 445.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 438.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 437.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 433.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 433.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 432.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 431.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 429.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 429.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 427.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 420.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 419.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 418.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 417.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 415.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 413.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 410.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 410.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 409.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 400.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 399.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 399.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 399.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 398.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 396.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 394.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 392.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 389.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 389.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 388.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 388.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 386.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 378.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 374.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 374.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 368.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 366.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 366.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 364.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 358.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 357.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 357.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 354.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 354.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 351.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 351.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 349.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 349.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 345.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 343.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 343.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 341.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 341.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 339.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 335.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 335.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 332.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 329.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 328.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 328.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 327.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 326.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 320.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 319.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 319.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 315.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 315.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 314.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 314.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 314.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 312.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 307.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 307.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 306.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 303.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 300.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 300.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 297.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 296.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 294.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 294.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 292.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 291.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 290.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 289.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 278.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 278.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 278.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 274.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 272.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 271.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 270.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 267.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 251.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 249.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 247.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 242.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 229.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 227.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 221.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 221.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 220.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 216.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 214.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 208.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 207.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 198.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 191.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 179.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 158.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 133.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 195.6
FF:10151-102I7 76 years, female 195.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 257.4
Samples: 4

Max nTPM: 277.5
Min nTPM: 244.3
Sample A Male 244.3
Sample B Male 255.2
Sample C Female 277.5
Sample D Female 252.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
73716566 Antisense, RP_051206_03_C11, Mouse strain C57BL/6J (56 days, male) 0.4

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