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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:141.3 nTPM
HPA Brain:149.0 nTPM
GTEx:141.3 nTPM
FANTOM5:275.8 Scaled Tags Per Million
Pig:97.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 128.0
1981 Female, age 72, midline 153.2
2048 Male, age 55, midline 132.7
2816 Male, age 47, midline 129.9
2194 Female, age 79, both hemispheres 118.7
2565 Male, age 75, midline 105.4
Cervical spinal cord, dorsal horn
nTPM: 130.7
2296 Male, age 66, both hemispheres 210.2
2173 Female, age 72, unknown 184.3
2069 Male, age 47, both hemispheres 133.2
1877 Male, age 55, unknown 100.2
2297 Male, age 75, both hemispheres 82.5
2721 Male, age 90, both hemispheres 73.8
Cervical spinal cord, ventral horn
nTPM: 149.0
2480 Male, age 75, both hemispheres 168.8
2098 Female, age 72, unknown 164.5
2295 Male, age 66, both hemispheres 147.7
2068 Male, age 55, unknown 147.3
2809 Male, age 90, both hemispheres 134.5
2820 Female, age 79, both hemispheres 131.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 141.3
Samples: 159

Max nTPM: 297.3
Min nTPM: 39.1
Std nTPM: 49.8
Median nTPM: 138.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 297.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 273.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 253.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 251.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 239.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 237.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 234.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 226.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 224.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 223.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 217.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 217.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 211.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 210.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 206.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 205.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 205.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 205.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 201.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 200.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 196.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 195.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 193.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 192.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 192.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 191.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 191.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 189.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 188.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 186.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 184.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 182.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 181.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 181.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 180.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 180.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 179.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 179.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 179.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 178.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 178.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 176.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 175.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 171.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 168.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 167.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 167.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 167.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 164.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 163.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 162.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 162.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 160.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 157.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 156.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 155.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 155.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 155.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 153.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 153.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 152.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 152.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 152.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 152.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 151.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 148.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 148.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 146.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 146.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 145.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 145.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 144.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 144.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 143.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 142.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 140.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 140.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 139.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 138.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 138.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 138.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 135.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 135.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 134.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 134.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 132.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 131.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 131.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 130.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 130.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 128.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 125.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 125.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 124.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 123.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 122.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 122.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 121.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 121.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 119.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 119.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 119.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 119.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 119.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 119.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 118.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 115.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 115.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 115.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 114.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 111.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 109.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 107.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 106.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 106.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 105.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 105.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 104.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 104.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 100.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 96.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 94.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 94.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 93.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 92.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 92.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 92.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 87.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 87.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 85.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 84.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 82.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 82.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 81.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 80.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 80.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 77.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 76.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 65.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 64.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 63.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 60.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 60.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 55.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 55.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 49.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 46.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 43.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 39.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

275.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 275.8
FF:10181-103D1 60 years, female 321.0
FF:10159-103A6 76 years, female 230.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 73.5
Samples: 4

Max nTPM: 81.5
Min nTPM: 60.7
Sample A Female 60.7
Sample B Female 80.5
Sample C Male 71.4
Sample D Male 81.5
Ventral spinal cord
nTPM: 97.6
Samples: 4

Max nTPM: 104.1
Min nTPM: 91.1
Sample A Female 93.3
Sample B Female 104.1
Sample C Male 91.1
Sample D Male 101.9

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