MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:78.8 nTPM
GTEx:6.8 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:26.2 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.8
2411 Female, age 72, unknown 85.8
2019 Male, age 18, unknown 77.7
1827 Male, age 72, unknown 77.6
2666 Male, age 74, left hemisphere 74.3
1833 Male, age 53, unknown 74.1
1830 Male, age 51, unknown 72.5
1870 Female, age 42, unknown 68.7
2219 Male, age 76, both hemispheres 67.9
2828 Female, age 72, unknown 60.4
2586 Male, age 75, left hemisphere 58.6
Dorsal raphe nucleus
nTPM: 64.8
2750 Male, age 76, both hemispheres 80.3
2047 Male, age 72, unknown 64.5
2298 Female, age 72, unknown 64.4
1828 Male, age 53, unknown 58.8
2016 Female, age 72, unknown 55.9
Inferior colliculus
nTPM: 74.9
2849 Male, age 72, unknown 79.5
1848 Female, age 42, unknown 78.0
2097 Female, age 72, unknown 76.8
1890 Male, age 53, unknown 65.2
Median raphe nucleus
nTPM: 78.8
2220 Male, age 76, midline 78.8
Periaquaductal grey, anterior
nTPM: 64.2
1795 Male, age 51, unknown 72.6
1947 Male, age 18, unknown 61.5
2502 Female, age 75, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 73.8
1840 Male, age 53, unknown 82.8
1831 Male, age 72, unknown 78.6
2850 Male, age 76, both hemispheres 67.2
2464 Female, age 72, unknown 66.7
Periaquaductal grey, lateral
nTPM: 69.8
2053 Male, age 18, unknown 73.8
2272 Male, age 74, both hemispheres 72.8
2140 Male, age 76, both hemispheres 62.8
Pretectal area
nTPM: 74.4
1816 Male, age 51, unknown 95.4
1944 Female, age 72, unknown 93.6
2007 Male, age 72, unknown 87.3
1817 Female, age 42, unknown 82.8
1815 Male, age 53, unknown 78.8
2407 Male, age 75, both hemispheres 70.5
2224 Female, age 72, unknown 68.8
2825 Male, age 18, unknown 67.8
2273 Male, age 74, both hemispheres 66.0
2667 Female, age 75, unknown 57.9
2316 Male, age 76, right hemisphere 49.2
Red nucleus
nTPM: 63.8
2588 Male, age 74, left hemisphere 82.2
2785 Male, age 18, unknown 75.0
2584 Male, age 75, left hemisphere 74.9
2503 Female, age 72, unknown 64.3
2823 Male, age 76, right hemisphere 61.4
1904 Male, age 53, unknown 61.2
2769 Male, age 72, unknown 61.2
1865 Male, age 51, unknown 59.9
1821 Female, age 72, unknown 59.8
2725 Female, age 75, unknown 56.6
1954 Female, age 42, unknown 55.7
2227 Male, age 72, unknown 52.7
Substantia nigra
nTPM: 69.6
2590 Female, age 75, unknown 85.6
1941 Male, age 53, unknown 83.4
1889 Female, age 72, unknown 81.2
2583 Male, age 75, right hemisphere 79.4
1916 Female, age 42, unknown 68.5
2665 Male, age 74, both hemispheres 64.6
2241 Male, age 72, unknown 63.7
1851 Male, age 51, unknown 61.0
2409 Female, age 72, unknown 54.9
2699 Male, age 18, unknown 53.8
Superior colliculus
nTPM: 75.8
2668 Female, age 75, unknown 92.8
1895 Male, age 76, right hemisphere 84.5
2087 Female, age 72, unknown 84.3
1913 Female, age 42, unknown 79.6
2261 Male, age 18, unknown 78.3
2587 Male, age 74, left hemisphere 74.1
1796 Male, age 53, unknown 71.5
1839 Male, age 51, unknown 71.0
1995 Male, age 72, unknown 67.3
2664 Male, age 75, both hemispheres 54.7
Ventral tegmental area
nTPM: 68.1
2410 Female, age 72, unknown 83.4
2223 Female, age 72, unknown 80.0
2218 Male, age 76, both hemispheres 69.8
1915 Female, age 42, unknown 59.7
2021 Male, age 53, unknown 59.5
1942 Male, age 51, unknown 56.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 19.6
Min nTPM: 1.7
Std nTPM: 2.4
Median nTPM: 6.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 13.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 12.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 12.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 11.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 10.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 10.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 10.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 10.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.9
FF:10158-103A5 76 years, female 49.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.3
Samples: 4

Max nTPM: 31.7
Min nTPM: 22.2
Sample A Female 29.3
Sample B Female 22.2
Sample C Male 31.7
Sample D Male 25.8
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 47.2
Min nTPM: 22.6
Sample A Female 22.6
Sample B Female 24.5
Sample C Male 47.2
Sample D Male 41.9
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 30.7
Min nTPM: 24.5
Sample B Female 25.4
Sample C Male 30.7
Sample D Male 24.5
Superior colliculi
nTPM: 30.0
Samples: 4

Max nTPM: 38.9
Min nTPM: 16.9
Sample A Female 31.2
Sample B Female 16.9
Sample C Male 38.9
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 29.1
Min nTPM: 19.3
Sample A Male 19.3
Sample B Male 28.4
Sample C Female 28.0
Sample D Female 29.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
73949403 Antisense, RP_051219_01_G09, Mouse strain C57BL/6J (56 days, male) 4.2

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