MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:33.1 nTPM
GTEx:13.1 nTPM
FANTOM5:42.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.5
1833 Male, age 53, unknown 35.3
2219 Male, age 76, both hemispheres 35.1
1830 Male, age 51, unknown 34.5
1870 Female, age 42, unknown 34.4
2586 Male, age 75, left hemisphere 33.0
2019 Male, age 18, unknown 30.4
2666 Male, age 74, left hemisphere 29.3
1827 Male, age 72, unknown 28.9
2828 Female, age 72, unknown 28.5
2411 Female, age 72, unknown 25.4
Dorsal raphe nucleus
nTPM: 26.3
2047 Male, age 72, unknown 27.2
1828 Male, age 53, unknown 26.9
2750 Male, age 76, both hemispheres 26.8
2298 Female, age 72, unknown 25.4
2016 Female, age 72, unknown 25.2
Inferior colliculus
nTPM: 27.7
2849 Male, age 72, unknown 31.7
1848 Female, age 42, unknown 26.9
1890 Male, age 53, unknown 26.9
2097 Female, age 72, unknown 25.6
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Periaquaductal grey, anterior
nTPM: 21.9
1947 Male, age 18, unknown 24.1
2502 Female, age 75, unknown 23.2
1795 Male, age 51, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 25.4
1831 Male, age 72, unknown 28.3
2464 Female, age 72, unknown 26.8
1840 Male, age 53, unknown 23.7
2850 Male, age 76, both hemispheres 22.9
Periaquaductal grey, lateral
nTPM: 25.8
2053 Male, age 18, unknown 28.2
2272 Male, age 74, both hemispheres 26.4
2140 Male, age 76, both hemispheres 22.7
Pretectal area
nTPM: 28.6
1815 Male, age 53, unknown 33.1
2316 Male, age 76, right hemisphere 31.8
2825 Male, age 18, unknown 30.7
2667 Female, age 75, unknown 29.8
2407 Male, age 75, both hemispheres 28.8
1817 Female, age 42, unknown 28.6
2224 Female, age 72, unknown 28.1
2007 Male, age 72, unknown 26.9
2273 Male, age 74, both hemispheres 26.2
1816 Male, age 51, unknown 25.3
1944 Female, age 72, unknown 25.3
Red nucleus
nTPM: 33.1
2588 Male, age 74, left hemisphere 41.6
2823 Male, age 76, right hemisphere 39.7
1865 Male, age 51, unknown 36.1
1904 Male, age 53, unknown 35.5
2785 Male, age 18, unknown 34.2
2584 Male, age 75, left hemisphere 33.3
1954 Female, age 42, unknown 31.7
1821 Female, age 72, unknown 31.6
2725 Female, age 75, unknown 30.8
2227 Male, age 72, unknown 29.1
2769 Male, age 72, unknown 27.7
2503 Female, age 72, unknown 25.4
Substantia nigra
nTPM: 28.8
2583 Male, age 75, right hemisphere 33.8
2241 Male, age 72, unknown 32.6
2590 Female, age 75, unknown 32.3
2409 Female, age 72, unknown 29.7
2699 Male, age 18, unknown 27.9
2665 Male, age 74, both hemispheres 27.4
1851 Male, age 51, unknown 27.2
1889 Female, age 72, unknown 26.5
1916 Female, age 42, unknown 26.1
1941 Male, age 53, unknown 24.9
Superior colliculus
nTPM: 28.7
1913 Female, age 42, unknown 36.9
1895 Male, age 76, right hemisphere 34.2
1839 Male, age 51, unknown 32.2
1995 Male, age 72, unknown 28.8
2664 Male, age 75, both hemispheres 28.5
2587 Male, age 74, left hemisphere 28.1
1796 Male, age 53, unknown 26.2
2087 Female, age 72, unknown 26.0
2668 Female, age 75, unknown 24.0
2261 Male, age 18, unknown 22.0
Ventral tegmental area
nTPM: 27.3
2223 Female, age 72, unknown 31.0
2218 Male, age 76, both hemispheres 29.8
1942 Male, age 51, unknown 27.8
2021 Male, age 53, unknown 25.6
2410 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 27.6
Min nTPM: 6.4
Std nTPM: 3.4
Median nTPM: 12.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 24.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 23.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 20.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 19.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 18.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 18.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.5
FF:10158-103A5 76 years, female 42.5

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