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ATP6V0E2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:313.0 nTPM
HPA Brain:341.8 nTPM
GTEx:313.0 nTPM
FANTOM5:250.0 Scaled Tags Per Million
Pig:111.3 nTPM
Mouse:472.0 nTPM
Allen mouse:24.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.8
Sample id Sample description nTPM
Amygdala
nTPM: 315.6
2814 Male, age 76, right hemisphere 388.1
2695 Female, age 67, right hemisphere 386.4
1987 Female, age 91, left hemisphere 291.3
2517 Female, age 94, left hemisphere 259.7
2514 Male, age 75, right hemisphere 252.4
Basal amygdala
nTPM: 315.9
2243 Female, age 91, right hemisphere 391.9
2609 Male, age 75, right hemisphere 330.3
2827 Female, age 67, right hemisphere 309.1
2685 Female, age 94, left hemisphere 302.7
1955 Male, age 76, both hemispheres 301.2
2110 Male, age 80, left hemisphere 259.8
Central amygdala
nTPM: 341.8
1905 Male, age 76, both hemispheres 393.7
2826 Female, age 94, left hemisphere 386.2
2515 Male, age 75, right hemisphere 340.9
2239 Male, age 80, left hemisphere 316.2
2701 Female, age 91, right hemisphere 271.9
Corticomedial amygdala
nTPM: 277.5
2242 Female, age 91, right hemisphere 312.9
2829 Male, age 80, left hemisphere 296.0
2428 Male, age 75, right hemisphere 295.4
2240 Male, age 76, both hemispheres 269.6
2535 Female, age 67, right hemisphere 264.8
2429 Female, age 94, left hemisphere 226.3
Lateral amygdala
nTPM: 334.5
2830 Female, age 67, right hemisphere 383.6
1883 Male, age 76, both hemispheres 376.0
2534 Female, age 94, left hemisphere 371.6
2516 Male, age 75, right hemisphere 332.3
2255 Female, age 91, right hemisphere 279.9
2256 Male, age 80, left hemisphere 263.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 313.0
Samples: 152

Max nTPM: 711.7
Min nTPM: 11.5
Std nTPM: 105.2
Median nTPM: 308.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 711.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 623.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 618.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 604.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 515.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 508.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 489.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 485.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 468.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 463.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 455.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 454.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 437.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 436.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 435.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 434.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 422.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 420.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 418.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 417.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 415.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 413.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 411.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 408.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 408.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 407.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 405.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 404.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 400.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 399.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 398.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 394.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 394.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 391.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 390.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 389.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 388.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 386.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 386.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 379.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 378.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 375.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 374.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 373.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 369.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 367.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 366.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 363.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 362.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 349.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 348.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 347.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 346.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 337.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 336.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 335.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 331.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 329.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 329.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 325.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 324.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 324.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 321.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 320.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 320.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 319.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 318.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 317.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 316.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 312.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 311.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 311.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 311.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 310.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 309.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 309.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 307.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 304.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 302.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 301.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 299.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 297.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 296.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 296.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 294.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 292.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 291.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 288.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 288.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 287.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 285.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 283.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 283.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 281.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 280.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 277.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 277.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 277.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 274.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 272.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 272.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 271.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 267.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 263.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 257.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 256.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 256.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 254.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 250.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 249.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 247.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 246.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 244.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 240.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 236.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 234.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 232.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 231.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 231.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 226.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 223.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 222.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 221.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 220.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 216.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 215.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 215.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 211.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 209.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 207.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 205.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 204.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 202.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 201.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 196.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 195.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 193.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 191.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 181.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 181.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 170.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 170.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 169.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 157.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 155.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 148.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 131.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 124.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 117.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 109.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

250.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 250.0
FF:10151-102I7 76 years, female 250.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.3
Pig sample Sample description nTPM
Amygdala
nTPM: 111.3
Samples: 4

Max nTPM: 150.2
Min nTPM: 88.1
Sample A Female 150.2
Sample B Female 88.1
Sample C Male 110.6
Sample D Male 96.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

472.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 472.0
Samples: 4

Max nTPM: 487.3
Min nTPM: 463.2
Sample A Male 487.3
Sample B Male 473.0
Sample C Female 464.4
Sample D Female 463.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.6
69059973 Antisense, RP_050317_04_H06, Mouse strain C57BL/6J (56 days, male) 24.6

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