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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.8
Sample id
Sample description
nTPM
Amygdala nTPM: 63.9
1987
Female, age 91, left hemisphere
80.5
2517
Female, age 94, left hemisphere
74.0
2814
Male, age 76, right hemisphere
69.1
2514
Male, age 75, right hemisphere
55.7
2695
Female, age 67, right hemisphere
39.9
Basal amygdala nTPM: 88.6
2243
Female, age 91, right hemisphere
129.0
2685
Female, age 94, left hemisphere
100.0
2110
Male, age 80, left hemisphere
87.0
1955
Male, age 76, both hemispheres
84.0
2609
Male, age 75, right hemisphere
66.5
2827
Female, age 67, right hemisphere
65.3
Central amygdala nTPM: 75.9
2239
Male, age 80, left hemisphere
107.3
2826
Female, age 94, left hemisphere
76.5
1905
Male, age 76, both hemispheres
69.9
2701
Female, age 91, right hemisphere
67.6
2515
Male, age 75, right hemisphere
58.0
Corticomedial amygdala nTPM: 91.8
2829
Male, age 80, left hemisphere
122.2
2242
Female, age 91, right hemisphere
104.1
2429
Female, age 94, left hemisphere
96.5
2535
Female, age 67, right hemisphere
89.7
2240
Male, age 76, both hemispheres
77.4
2428
Male, age 75, right hemisphere
60.8
Lateral amygdala nTPM: 75.2
2534
Female, age 94, left hemisphere
100.0
2255
Female, age 91, right hemisphere
92.1
1883
Male, age 76, both hemispheres
77.3
2256
Male, age 80, left hemisphere
76.0
2516
Male, age 75, right hemisphere
53.5
2830
Female, age 67, right hemisphere
52.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 13.0
Samples: 152
Max nTPM: 34.0
Min nTPM: 2.4
Std nTPM: 6.3
Median nTPM: 12.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
34.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
28.7
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
28.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
28.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
26.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
26.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
26.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
24.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
24.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
22.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
22.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
22.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
22.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
22.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
21.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
21.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
21.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
21.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
20.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
20.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
20.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
19.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
19.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
19.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
19.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
19.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
19.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
18.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
18.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
18.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
18.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
18.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
18.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
17.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
17.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
17.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
17.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
17.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
17.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
17.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
17.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
16.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
16.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
16.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
16.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
16.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
16.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
16.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
15.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
15.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
15.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
15.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
15.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
15.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
15.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
15.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
14.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
14.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
14.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
14.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
14.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
14.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
14.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
14.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
13.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
13.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
13.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
13.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
13.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
13.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
12.9
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
12.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
12.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
12.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
12.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
12.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
12.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
11.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
11.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
11.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
11.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
11.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
11.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
11.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
11.4
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
11.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
11.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
10.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
10.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
10.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
10.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
10.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
10.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
10.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
9.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
9.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
9.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
9.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
9.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
9.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
9.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
9.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
8.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
8.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
8.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
8.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
8.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
8.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
8.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
8.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
8.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
7.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
7.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
7.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
7.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
7.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
7.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
7.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
7.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
7.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
6.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
6.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
6.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
6.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
6.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
6.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
6.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
6.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
6.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
6.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
6.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
6.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
6.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
6.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
5.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
5.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
5.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
5.4
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
5.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
5.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
5.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
5.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
4.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
4.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
4.4
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
3.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
3.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
3.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
3.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
2.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
2.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 123.2
Samples: 4
Max nTPM: 138.9
Min nTPM: 113.0
Sample A
Male
138.9
Sample B
Male
122.3
Sample C
Female
113.0
Sample D
Female
118.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
