MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.0 nTPM
HPA Brain:70.5 nTPM
GTEx:75.0 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:78.3 nTPM
Mouse:0.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.4
2586 Male, age 75, left hemisphere 66.0
2828 Female, age 72, unknown 64.1
1827 Male, age 72, unknown 61.1
2411 Female, age 72, unknown 59.1
1870 Female, age 42, unknown 55.0
2019 Male, age 18, unknown 54.6
2219 Male, age 76, both hemispheres 50.6
1833 Male, age 53, unknown 49.4
1830 Male, age 51, unknown 49.3
2666 Male, age 74, left hemisphere 44.7
Dorsal raphe nucleus
nTPM: 65.1
2298 Female, age 72, unknown 82.7
2047 Male, age 72, unknown 68.4
1828 Male, age 53, unknown 60.6
2750 Male, age 76, both hemispheres 58.4
2016 Female, age 72, unknown 55.3
Inferior colliculus
nTPM: 55.9
2097 Female, age 72, unknown 65.3
1848 Female, age 42, unknown 55.7
1890 Male, age 53, unknown 54.1
2849 Male, age 72, unknown 48.4
Median raphe nucleus
nTPM: 70.5
2220 Male, age 76, midline 70.5
Periaquaductal grey, anterior
nTPM: 70.4
1795 Male, age 51, unknown 75.9
2502 Female, age 75, unknown 69.8
1947 Male, age 18, unknown 65.5
Periaquaductal grey, dorsal
nTPM: 51.1
2850 Male, age 76, both hemispheres 53.5
1840 Male, age 53, unknown 53.0
1831 Male, age 72, unknown 50.8
2464 Female, age 72, unknown 47.1
Periaquaductal grey, lateral
nTPM: 63.4
2272 Male, age 74, both hemispheres 80.3
2140 Male, age 76, both hemispheres 62.4
2053 Male, age 18, unknown 47.6
Pretectal area
nTPM: 59.5
2273 Male, age 74, both hemispheres 77.1
2007 Male, age 72, unknown 71.2
2224 Female, age 72, unknown 65.8
1816 Male, age 51, unknown 62.1
1944 Female, age 72, unknown 60.8
1817 Female, age 42, unknown 59.5
2667 Female, age 75, unknown 53.8
2825 Male, age 18, unknown 52.4
2316 Male, age 76, right hemisphere 52.2
1815 Male, age 53, unknown 51.7
2407 Male, age 75, both hemispheres 47.5
Red nucleus
nTPM: 53.4
2785 Male, age 18, unknown 66.7
2503 Female, age 72, unknown 60.5
2227 Male, age 72, unknown 57.2
2769 Male, age 72, unknown 56.8
2725 Female, age 75, unknown 54.1
1904 Male, age 53, unknown 52.1
1821 Female, age 72, unknown 52.0
1954 Female, age 42, unknown 51.6
2823 Male, age 76, right hemisphere 48.0
1865 Male, age 51, unknown 47.3
2584 Male, age 75, left hemisphere 47.1
2588 Male, age 74, left hemisphere 47.1
Substantia nigra
nTPM: 57.8
1916 Female, age 42, unknown 85.3
1851 Male, age 51, unknown 68.8
1941 Male, age 53, unknown 67.0
2590 Female, age 75, unknown 60.8
1889 Female, age 72, unknown 60.1
2699 Male, age 18, unknown 58.2
2583 Male, age 75, right hemisphere 50.7
2665 Male, age 74, both hemispheres 49.3
2241 Male, age 72, unknown 42.6
2409 Female, age 72, unknown 35.0
Superior colliculus
nTPM: 54.3
1796 Male, age 53, unknown 68.8
2261 Male, age 18, unknown 65.3
2087 Female, age 72, unknown 58.5
2668 Female, age 75, unknown 53.7
2587 Male, age 74, left hemisphere 52.7
2664 Male, age 75, both hemispheres 52.7
1913 Female, age 42, unknown 50.2
1995 Male, age 72, unknown 49.6
1839 Male, age 51, unknown 48.9
1895 Male, age 76, right hemisphere 42.3
Ventral tegmental area
nTPM: 63.9
1915 Female, age 42, unknown 71.5
2410 Female, age 72, unknown 69.0
2218 Male, age 76, both hemispheres 67.1
1942 Male, age 51, unknown 62.7
2021 Male, age 53, unknown 56.6
2223 Female, age 72, unknown 56.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 75.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.0
Samples: 139

Max nTPM: 186.8
Min nTPM: 28.8
Std nTPM: 23.9
Median nTPM: 74.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 186.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 170.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 122.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 114.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 113.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 112.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 110.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 109.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 107.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 106.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 78.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.0
Samples: 4

Max nTPM: 82.8
Min nTPM: 37.3
Sample A Female 82.8
Sample B Female 50.1
Sample C Male 65.9
Sample D Male 37.3
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 73.3
Min nTPM: 56.2
Sample A Female 59.2
Sample B Female 56.2
Sample C Male 66.2
Sample D Male 73.3
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 62.3
Min nTPM: 48.1
Sample B Female 48.1
Sample C Male 62.3
Sample D Male 49.9
Superior colliculi
nTPM: 78.3
Samples: 4

Max nTPM: 104.1
Min nTPM: 66.2
Sample A Female 104.1
Sample B Female 70.8
Sample C Male 72.0
Sample D Male 66.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.1
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
2549 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 1.6
2550 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 0.6

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