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NPTX1
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  • NPTX1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
Neuronal projections: High
Synapses: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

232.597
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:30.1 nTPM
HPA Brain:273.6 nTPM
GTEx:30.1 nTPM
FANTOM5:91.6 Scaled Tags Per Million
Pig:175.7 nTPM
Mouse:173.5 nTPM
Allen mouse:11.3 Expression energy

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA077062
Glial cells Not detected
Neuronal cells High
Neuronal projections High
Synapses High

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA077062
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA077062
Hippocampal formation mean intensity 232.597
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 194.649
Molecular layer of the dentate gyrus 70.078
Granular dentate gyrus 99.874
CA1 - oriens layer 111.074
CA1 - pyramidal layer 70.723
CA1 - radiatum layer 146.404
CA2 - oriens layer 125.037
CA2 - pyramidal layer 77.504
CA2 - radiatum layer 179.710
CA3 - oriens layer 232.597
CA3 - pyramidal layer 121.522
CA3 - radiatum layer 230.261
Stratum lucidum 229.438
Lacunosum moleculare 50.758
Subiculum 28.728

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.6
Sample id Sample description nTPM
Hippocampus
nTPM: 222.9
1898 Male, age 80, left hemisphere 360.8
2148 Female, age 91, left hemisphere 324.0
1855 Male, age 76, left hemisphere 266.0
2621 Female, age 67, right hemisphere 233.0
2529 Female, age 94, left hemisphere 77.0
1911 Female, age 85, right hemisphere 76.6
Dentate gyrus
nTPM: 273.6
2531 Female, age 67, both hemispheres 369.3
2010 Male, age 76, both hemispheres 314.5
2530 Female, age 94, left hemisphere 284.1
1927 Female, age 91, both hemispheres 267.3
2528 Male, age 74, both hemispheres 204.1
2246 Female, age 85, both hemispheres 202.5
Entorhinal gyrus
nTPM: 268.2
2613 Female, age 94, left hemisphere 400.1
2764 Male, age 80, right hemisphere 346.9
1938 Female, age 85, left hemisphere 305.4
2686 Male, age 75, right hemisphere 205.8
1787 Male, age 76, left hemisphere 202.4
2117 Female, age 91, right hemisphere 148.8
Hippocampus, CA1
nTPM: 227.0
2045 Male, age 76, both hemispheres 283.1
1873 Female, age 85, both hemispheres 241.9
2527 Male, age 74, both hemispheres 208.0
2749 Male, age 80, left hemisphere 206.7
2082 Female, age 91, right hemisphere 195.3
Hippocampus, CA2
nTPM: 192.4
1963 Male, age 80, left hemisphere 363.9
1892 Male, age 76, both hemispheres 231.7
1940 Female, age 85, left hemisphere 158.7
2113 Female, age 91, right hemisphere 151.7
2437 Female, age 94, left hemisphere 143.7
2249 Male, age 74, both hemispheres 105.0
Hippocampus, CA3
nTPM: 188.5
2861 Female, age 67, both hemispheres 330.5
2620 Female, age 94, left hemisphere 309.0
1867 Male, age 76, both hemispheres 144.7
2436 Male, age 74, both hemispheres 134.2
2137 Male, age 80, left hemisphere 106.6
1891 Female, age 85, both hemispheres 105.8
Parahippocampal cortex
nTPM: 214.2
1850 Male, age 80, both hemispheres 327.3
2532 Female, age 72, left hemisphere 253.9
1990 Female, age 91, right hemisphere 245.5
2622 Female, age 67, right hemisphere 243.5
1933 Female, age 85, both hemispheres 215.2
2693 Female, age 94, both hemispheres 205.3
2692 Male, age 74, both hemispheres 188.0
2245 Female, age 91, both hemispheres 186.4
2250 Female, age 67, right hemisphere 142.5
2018 Male, age 76, both hemispheres 134.5
Perirhinal gyrus
nTPM: 273.0
1847 Female, age 91, left hemisphere 395.1
1794 Male, age 80, right hemisphere 348.0
2521 Female, age 94, right hemisphere 211.8
2848 Male, age 76, right hemisphere 211.8
1841 Female, age 85, right hemisphere 198.1
Subiculum
nTPM: 122.1
1977 Female, age 85, both hemispheres 211.2
2729 Female, age 91, right hemisphere 173.8
2619 Male, age 74, both hemispheres 120.3
1901 Male, age 80, both hemispheres 95.7
2042 Male, age 76, both hemispheres 69.3
2438 Female, age 94, left hemisphere 62.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.1
Samples: 197

Max nTPM: 259.3
Min nTPM: 0.1
Std nTPM: 42.8
Median nTPM: 12.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 259.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 217.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 216.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 172.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 171.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 140.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 137.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 132.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 127.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 115.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 109.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 108.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 104.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 104.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 103.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 87.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 87.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 86.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 86.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 83.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 80.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 80.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 79.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 78.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 76.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 74.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 69.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 69.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 68.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 66.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 66.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 62.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 60.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 60.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 59.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 58.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 57.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 57.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 57.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 46.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 46.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 46.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 45.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 42.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 41.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 41.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 41.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 41.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 40.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 40.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 39.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 37.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 36.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 35.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 35.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 34.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 33.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 32.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 32.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 32.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 31.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 30.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 30.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 29.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 28.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 27.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 26.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 26.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 26.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 25.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 23.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 22.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 22.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 22.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 21.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 20.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 19.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 18.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 18.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 17.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 17.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 17.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 17.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 16.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 16.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 16.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 15.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 15.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 14.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 14.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 14.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 13.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 13.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 13.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 13.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 13.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 12.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 12.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 12.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 12.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 11.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 11.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 10.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 10.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 10.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 10.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 9.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 9.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 9.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 8.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 8.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 8.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 8.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 8.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 7.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 7.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 7.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 7.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 7.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 7.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 6.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 6.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 6.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 6.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 6.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 6.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 6.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 5.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 5.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 5.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 5.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 5.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 5.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 5.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 5.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 5.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 5.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 4.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 4.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 4.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 3.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 3.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 3.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 3.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 3.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 3.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 3.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 2.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 2.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 2.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 2.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 2.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 2.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 2.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 2.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 2.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 2.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 2.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 1.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 1.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 0.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 0.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 0.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 0.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 0.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 0.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 0.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 0.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 0.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 0.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 0.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 0.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 0.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 91.6
FF:10169-103B7 60 years, female 116.3
FF:10153-102I9 76 years, female 67.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.7
Pig sample Sample description nTPM
Subiculum
nTPM: 62.7
Samples: 4

Max nTPM: 73.4
Min nTPM: 50.9
Sample A Female 72.1
Sample B Female 54.3
Sample C Male 73.4
Sample D Male 50.9
Dorsal hippocampus
nTPM: 175.4
Samples: 4

Max nTPM: 274.4
Min nTPM: 53.8
Sample A Female 220.8
Sample B Female 274.4
Sample C Male 53.8
Sample D Male 152.4
Entorhinal cortex
nTPM: 90.5
Samples: 4

Max nTPM: 101.7
Min nTPM: 82.4
Sample A Female 101.7
Sample B Female 94.0
Sample C Male 84.0
Sample D Male 82.4
Ventral hippocampus
nTPM: 175.7
Samples: 4

Max nTPM: 233.0
Min nTPM: 109.2
Sample A Female 233.0
Sample B Female 109.2
Sample C Male 209.6
Sample D Male 151.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 95.4
Samples: 4

Max nTPM: 99.4
Min nTPM: 93.1
Sample A Male 95.2
Sample B Male 93.1
Sample C Female 99.4
Sample D Female 93.8
Hippocampal formation
nTPM: 173.5
Samples: 4

Max nTPM: 226.4
Min nTPM: 115.4
Sample A Male 115.4
Sample B Male 206.4
Sample C Female 226.4
Sample D Female 145.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.3
71234666 Antisense, RP_050505_02_H05, Mouse strain C57BL/6J (56 days, male) 14.5
73520998 Antisense, RP_051101_02_H05, Mouse strain C57BL/6J (56 days, male) 8.1

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