We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GAA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GAA
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GAA
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Alpha glucosidase
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
FDA approved drug targets
Human disease related genes
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q25.3
Chromosome location (bp) 80101556 - 80119881
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000171298 (version 109)
Entrez gene 2548
HGNC HGNC:4065
UniProt P10253 (UniProt - Evidence at protein level)
neXtProt NX_P10253
GeneCards GAA
Antibodypedia GAA antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Essential for the degradation of glycogen in lysosomes 1, 2, 3, 4. Has highest activity on alpha-1,4-linked glycosidic linkages, but can also hydrolyze alpha-1,6-linked glucans 5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Glycosidase, Hydrolase
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes lysosomal alpha-glucosidase, which is essential for the degradation of glycogen to glucose in lysosomes. The encoded preproprotein is proteolytically processed to generate multiple intermediate forms and the mature form of the enzyme. Defects in this gene are the cause of glycogen storage disease II, also known as Pompe's disease, which is an autosomal recessive disorder with a broad clinical spectrum. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GAA-201
ENSP00000305692
ENST00000302262
P10253
[Direct mapping] Lysosomal alpha-glucosidase 76 kDa lysosomal alpha-glucosidase 70 kDa lysosomal alpha-glucosidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of carbohydrate metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000023 [maltose metabolic process]
GO:0002026 [regulation of the force of heart contraction]
GO:0002086 [diaphragm contraction]
GO:0003007 [heart morphogenesis]
GO:0003824 [catalytic activity]
GO:0004553 [hydrolase activity, hydrolyzing O-glycosyl compounds]
GO:0004558 [alpha-1,4-glucosidase activity]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005886 [plasma membrane]
GO:0005975 [carbohydrate metabolic process]
GO:0005977 [glycogen metabolic process]
GO:0005980 [glycogen catabolic process]
GO:0005985 [sucrose metabolic process]
GO:0006006 [glucose metabolic process]
GO:0006941 [striated muscle contraction]
GO:0007040 [lysosome organization]
GO:0007626 [locomotory behavior]
GO:0008152 [metabolic process]
GO:0009888 [tissue development]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
GO:0030246 [carbohydrate binding]
GO:0032450 [maltose alpha-glucosidase activity]
GO:0035577 [azurophil granule membrane]
GO:0043181 [vacuolar sequestering]
GO:0043202 [lysosomal lumen]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0046716 [muscle cell cellular homeostasis]
GO:0050884 [neuromuscular process controlling posture]
GO:0050885 [neuromuscular process controlling balance]
GO:0060048 [cardiac muscle contraction]
GO:0061723 [glycophagy]
GO:0070062 [extracellular exosome]
GO:0070821 [tertiary granule membrane]
GO:0090599 [alpha-glucosidase activity]
GO:0101003 [ficolin-1-rich granule membrane]
GO:0110165 [cellular anatomical entity]
GO:0120282 [autolysosome lumen]
Show all
952 aa
105.3 kDa
No 1
GAA-202
ENSP00000374665
ENST00000390015
P10253
[Direct mapping] Lysosomal alpha-glucosidase 76 kDa lysosomal alpha-glucosidase 70 kDa lysosomal alpha-glucosidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of carbohydrate metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000023 [maltose metabolic process]
GO:0002086 [diaphragm contraction]
GO:0003824 [catalytic activity]
GO:0004553 [hydrolase activity, hydrolyzing O-glycosyl compounds]
GO:0004558 [alpha-1,4-glucosidase activity]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005886 [plasma membrane]
GO:0005975 [carbohydrate metabolic process]
GO:0005980 [glycogen catabolic process]
GO:0005985 [sucrose metabolic process]
GO:0006006 [glucose metabolic process]
GO:0007040 [lysosome organization]
GO:0008152 [metabolic process]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0016798 [hydrolase activity, acting on glycosyl bonds]
GO:0030246 [carbohydrate binding]
GO:0032450 [maltose alpha-glucosidase activity]
GO:0035577 [azurophil granule membrane]
GO:0043181 [vacuolar sequestering]
GO:0043202 [lysosomal lumen]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0060048 [cardiac muscle contraction]
GO:0070062 [extracellular exosome]
GO:0070821 [tertiary granule membrane]
GO:0090599 [alpha-glucosidase activity]
GO:0101003 [ficolin-1-rich granule membrane]
GO:0110165 [cellular anatomical entity]
Show all
952 aa
105.3 kDa
No 1
GAA-204
ENSP00000460543
ENST00000570803
I3L3L3
[Direct mapping] Lysosomal alpha-glucosidase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of carbohydrate metabolism
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003824 [catalytic activity]
GO:0005975 [carbohydrate metabolic process]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030246 [carbohydrate binding]
Show all
284 aa
31.6 kDa
No 1
GAA-209
ENSP00000458306
ENST00000577106
I3L0S5
[Direct mapping] Lysosomal alpha-glucosidase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of carbohydrate metabolism
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
Show all
208 aa
23 kDa
No 1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org