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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:13006.5 nTPM
GTEx:13006.5 nTPM
FANTOM5:260.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA030877Antibody CAB000133
Squamous epithelial cells HighMedium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13006.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 13006.5
Samples: 156

Max nTPM: 55141.3
Min nTPM: 0.5
Std nTPM: 13526.4
Median nTPM: 10227.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 55141.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 50861.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 48425.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 47994.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 46274.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 45892.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 45115.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 43298.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 39811.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 39562.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 39013.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 36936.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 34964.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 34030.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 32068.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 30209.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 29741.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 29681.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 29598.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 29473.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 28869.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 28388.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 26980.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 26964.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 26910.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 26477.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 26389.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 26289.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 25462.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 25296.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 24774.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 24521.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 24348.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 24298.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 24233.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 24109.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 23313.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 20520.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 20366.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 20126.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 19988.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 19711.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 19694.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 19554.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 19134.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 18692.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 18507.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 18437.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 17751.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 17463.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 17338.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 17273.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 17251.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 16729.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 16384.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 15794.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 15528.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 15302.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 15129.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 14886.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 14763.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 14645.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 14303.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 13960.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 13704.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 13690.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 12934.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 12771.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 12555.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 12282.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 12193.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 12167.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 11868.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 11149.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 10472.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 10390.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 10385.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 10350.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 10103.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 9776.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 9731.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 8615.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 8376.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 8157.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 7550.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 7227.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 7199.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 7080.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 6935.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 6805.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 6206.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 5131.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 4962.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 4763.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 4440.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 4248.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 4123.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 4082.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 3676.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2494.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2442.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2351.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1867.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1592.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1564.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1471.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1308.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1267.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1165.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1147.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1033.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1004.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 997.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 955.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 934.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 648.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 566.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 451.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 449.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 397.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 269.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 227.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 220.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 213.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 193.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 159.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 105.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 67.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 65.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 33.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 30.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 28.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 25.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 24.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 23.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 19.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 18.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 13.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 12.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 11.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 11.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 10.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 10.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 8.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 4.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 4.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 4.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

260.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 260.2
FF:10204-103F6 68 years, female 260.2

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