MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA Brain:268.6 nTPM
GTEx:46.9 nTPM
FANTOM5:287.2 Scaled Tags Per Million
Pig:262.2 nTPM
Mouse:306.7 nTPM
Allen mouse:23.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 268.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 202.3
2586 Male, age 75, left hemisphere 291.8
2019 Male, age 18, unknown 281.5
1827 Male, age 72, unknown 214.6
2219 Male, age 76, both hemispheres 196.2
2411 Female, age 72, unknown 193.3
2828 Female, age 72, unknown 183.6
2666 Male, age 74, left hemisphere 172.6
1870 Female, age 42, unknown 170.6
1833 Male, age 53, unknown 167.8
1830 Male, age 51, unknown 151.3
Dorsal raphe nucleus
nTPM: 191.0
2298 Female, age 72, unknown 259.7
1828 Male, age 53, unknown 198.6
2047 Male, age 72, unknown 185.7
2016 Female, age 72, unknown 155.9
2750 Male, age 76, both hemispheres 154.8
Inferior colliculus
nTPM: 193.1
2097 Female, age 72, unknown 226.3
1848 Female, age 42, unknown 193.1
1890 Male, age 53, unknown 177.8
2849 Male, age 72, unknown 175.2
Median raphe nucleus
nTPM: 165.3
2220 Male, age 76, midline 165.3
Periaquaductal grey, anterior
nTPM: 198.2
1795 Male, age 51, unknown 233.7
2502 Female, age 75, unknown 207.6
1947 Male, age 18, unknown 153.4
Periaquaductal grey, dorsal
nTPM: 186.8
1831 Male, age 72, unknown 209.4
1840 Male, age 53, unknown 185.4
2850 Male, age 76, both hemispheres 182.2
2464 Female, age 72, unknown 170.4
Periaquaductal grey, lateral
nTPM: 210.0
2272 Male, age 74, both hemispheres 258.2
2053 Male, age 18, unknown 192.4
2140 Male, age 76, both hemispheres 179.5
Pretectal area
nTPM: 268.6
1816 Male, age 51, unknown 393.9
1944 Female, age 72, unknown 366.0
1817 Female, age 42, unknown 347.2
2007 Male, age 72, unknown 343.3
1815 Male, age 53, unknown 277.3
2273 Male, age 74, both hemispheres 263.7
2667 Female, age 75, unknown 256.4
2224 Female, age 72, unknown 214.9
2407 Male, age 75, both hemispheres 179.9
2825 Male, age 18, unknown 159.0
2316 Male, age 76, right hemisphere 152.8
Red nucleus
nTPM: 181.4
2785 Male, age 18, unknown 289.8
2725 Female, age 75, unknown 199.4
2503 Female, age 72, unknown 192.9
1821 Female, age 72, unknown 188.8
2584 Male, age 75, left hemisphere 182.1
2588 Male, age 74, left hemisphere 180.2
2769 Male, age 72, unknown 163.7
1954 Female, age 42, unknown 161.5
2227 Male, age 72, unknown 160.8
1904 Male, age 53, unknown 158.4
1865 Male, age 51, unknown 157.1
2823 Male, age 76, right hemisphere 142.4
Substantia nigra
nTPM: 193.5
1889 Female, age 72, unknown 277.8
1941 Male, age 53, unknown 263.0
1916 Female, age 42, unknown 201.5
2583 Male, age 75, right hemisphere 198.8
2665 Male, age 74, both hemispheres 193.0
1851 Male, age 51, unknown 185.1
2590 Female, age 75, unknown 167.7
2241 Male, age 72, unknown 156.0
2409 Female, age 72, unknown 152.7
2699 Male, age 18, unknown 139.4
Superior colliculus
nTPM: 219.0
2087 Female, age 72, unknown 293.4
2261 Male, age 18, unknown 279.2
1796 Male, age 53, unknown 237.4
1995 Male, age 72, unknown 213.7
1913 Female, age 42, unknown 211.4
2668 Female, age 75, unknown 204.3
2587 Male, age 74, left hemisphere 194.5
1895 Male, age 76, right hemisphere 190.3
2664 Male, age 75, both hemispheres 183.8
1839 Male, age 51, unknown 182.3
Ventral tegmental area
nTPM: 175.4
2410 Female, age 72, unknown 203.7
2223 Female, age 72, unknown 194.9
1915 Female, age 42, unknown 171.8
1942 Male, age 51, unknown 169.7
2218 Male, age 76, both hemispheres 169.1
2021 Male, age 53, unknown 142.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 210.5
Min nTPM: 7.2
Std nTPM: 26.7
Median nTPM: 41.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 210.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 172.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 124.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 114.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 85.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 85.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 84.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 82.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 80.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 79.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 287.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 287.2
FF:10158-103A5 76 years, female 287.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 262.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 181.1
Samples: 4

Max nTPM: 232.0
Min nTPM: 132.0
Sample A Female 232.0
Sample B Female 142.1
Sample C Male 218.2
Sample D Male 132.0
Midbrain
nTPM: 248.6
Samples: 4

Max nTPM: 392.4
Min nTPM: 140.7
Sample A Female 196.0
Sample B Female 140.7
Sample C Male 392.4
Sample D Male 265.1
Periaqueductal gray
nTPM: 149.8
Samples: 3

Max nTPM: 175.1
Min nTPM: 133.4
Sample B Female 140.9
Sample C Male 175.1
Sample D Male 133.4
Superior colliculi
nTPM: 262.2
Samples: 4

Max nTPM: 324.3
Min nTPM: 192.5
Sample A Female 264.9
Sample B Female 192.5
Sample C Male 324.3
Sample D Male 267.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 306.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 306.7
Samples: 4

Max nTPM: 325.5
Min nTPM: 288.9
Sample A Male 288.9
Sample B Male 303.9
Sample C Female 325.5
Sample D Female 308.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.0
73769319 Antisense, RP_051121_04_B04, Mouse strain C57BL/6J (56 days, male) 23.6
68745197 Antisense, RP_050210_01_D09, Mouse strain C57BL/6J (56 days, male) 22.3

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