MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.4 nTPM
HPA Brain:154.4 nTPM
GTEx:47.4 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:40.0 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 154.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.1
2586 Male, age 75, left hemisphere 184.4
2019 Male, age 18, unknown 181.6
1830 Male, age 51, unknown 141.1
2828 Female, age 72, unknown 140.1
2411 Female, age 72, unknown 138.4
1827 Male, age 72, unknown 133.9
1870 Female, age 42, unknown 127.1
1833 Male, age 53, unknown 125.6
2666 Male, age 74, left hemisphere 125.0
2219 Male, age 76, both hemispheres 123.4
Dorsal raphe nucleus
nTPM: 119.6
2750 Male, age 76, both hemispheres 153.3
2016 Female, age 72, unknown 127.0
1828 Male, age 53, unknown 116.0
2047 Male, age 72, unknown 101.5
2298 Female, age 72, unknown 100.0
Inferior colliculus
nTPM: 107.9
1890 Male, age 53, unknown 127.3
2097 Female, age 72, unknown 114.7
1848 Female, age 42, unknown 95.8
2849 Male, age 72, unknown 93.8
Median raphe nucleus
nTPM: 113.7
2220 Male, age 76, midline 113.7
Periaquaductal grey, anterior
nTPM: 115.8
2502 Female, age 75, unknown 131.2
1795 Male, age 51, unknown 122.3
1947 Male, age 18, unknown 93.8
Periaquaductal grey, dorsal
nTPM: 112.8
1831 Male, age 72, unknown 153.1
2850 Male, age 76, both hemispheres 114.4
2464 Female, age 72, unknown 99.9
1840 Male, age 53, unknown 83.6
Periaquaductal grey, lateral
nTPM: 131.4
2272 Male, age 74, both hemispheres 133.6
2140 Male, age 76, both hemispheres 133.5
2053 Male, age 18, unknown 127.0
Pretectal area
nTPM: 129.2
2273 Male, age 74, both hemispheres 155.0
2316 Male, age 76, right hemisphere 154.1
2007 Male, age 72, unknown 146.0
2407 Male, age 75, both hemispheres 143.7
1815 Male, age 53, unknown 134.5
1817 Female, age 42, unknown 128.9
2667 Female, age 75, unknown 127.8
1816 Male, age 51, unknown 113.1
2825 Male, age 18, unknown 111.4
1944 Female, age 72, unknown 106.0
2224 Female, age 72, unknown 101.2
Red nucleus
nTPM: 154.4
2785 Male, age 18, unknown 188.9
2823 Male, age 76, right hemisphere 177.5
2584 Male, age 75, left hemisphere 174.5
1904 Male, age 53, unknown 162.0
1865 Male, age 51, unknown 157.6
2769 Male, age 72, unknown 149.1
2588 Male, age 74, left hemisphere 148.8
2227 Male, age 72, unknown 145.4
1954 Female, age 42, unknown 139.7
2503 Female, age 72, unknown 138.6
1821 Female, age 72, unknown 138.1
2725 Female, age 75, unknown 133.3
Substantia nigra
nTPM: 108.4
2583 Male, age 75, right hemisphere 161.0
1941 Male, age 53, unknown 124.3
1889 Female, age 72, unknown 118.1
1851 Male, age 51, unknown 115.9
2590 Female, age 75, unknown 111.0
2699 Male, age 18, unknown 104.7
2409 Female, age 72, unknown 94.3
1916 Female, age 42, unknown 86.9
2241 Male, age 72, unknown 84.2
2665 Male, age 74, both hemispheres 83.7
Superior colliculus
nTPM: 129.2
1913 Female, age 42, unknown 156.2
1995 Male, age 72, unknown 154.5
2664 Male, age 75, both hemispheres 130.4
1796 Male, age 53, unknown 129.0
2587 Male, age 74, left hemisphere 128.6
2668 Female, age 75, unknown 123.9
1839 Male, age 51, unknown 120.5
2261 Male, age 18, unknown 118.9
1895 Male, age 76, right hemisphere 114.8
2087 Female, age 72, unknown 114.5
Ventral tegmental area
nTPM: 116.0
2223 Female, age 72, unknown 140.2
1942 Male, age 51, unknown 116.1
2218 Male, age 76, both hemispheres 114.4
2021 Male, age 53, unknown 111.7
2410 Female, age 72, unknown 111.3
1915 Female, age 42, unknown 102.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 139

Max nTPM: 117.9
Min nTPM: 23.8
Std nTPM: 13.6
Median nTPM: 45.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 117.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 89.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 77.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 74.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 70.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 68.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 67.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 67.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.0
FF:10158-103A5 76 years, female 125.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.9
Samples: 4

Max nTPM: 49.8
Min nTPM: 34.1
Sample A Female 44.4
Sample B Female 34.1
Sample C Male 35.3
Sample D Male 49.8
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 75.8
Min nTPM: 32.5
Sample A Female 75.8
Sample B Female 32.5
Sample C Male 40.6
Sample D Male 38.8
Periaqueductal gray
nTPM: 32.6
Samples: 3

Max nTPM: 33.6
Min nTPM: 31.8
Sample B Female 31.8
Sample C Male 32.3
Sample D Male 33.6
Superior colliculi
nTPM: 41.4
Samples: 4

Max nTPM: 48.7
Min nTPM: 29.3
Sample A Female 48.7
Sample B Female 29.3
Sample C Male 44.1
Sample D Male 43.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.0
Samples: 4

Max nTPM: 42.4
Min nTPM: 37.5
Sample A Male 42.4
Sample B Male 38.7
Sample C Female 37.5
Sample D Female 41.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69080510 Antisense, RP_050324_02_B11, Mouse strain C57BL/6J (56 days, male) 1.6

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