We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ENC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ENC1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:94.8 nTPM
HPA Brain:303.1 nTPM
GTEx:94.8 nTPM
FANTOM5:464.0 Scaled Tags Per Million
Pig:150.0 nTPM
Mouse:275.5 nTPM
Allen mouse:11.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.1
Sample id Sample description nTPM
Amygdala
nTPM: 130.3
2517 Female, age 94, left hemisphere 302.7
1987 Female, age 91, left hemisphere 177.7
2514 Male, age 75, right hemisphere 123.5
2695 Female, age 67, right hemisphere 25.2
2814 Male, age 76, right hemisphere 22.2
Basal amygdala
nTPM: 303.1
2243 Female, age 91, right hemisphere 460.1
2685 Female, age 94, left hemisphere 425.5
2110 Male, age 80, left hemisphere 390.9
2827 Female, age 67, right hemisphere 218.4
2609 Male, age 75, right hemisphere 176.7
1955 Male, age 76, both hemispheres 147.2
Central amygdala
nTPM: 145.6
2826 Female, age 94, left hemisphere 357.4
2239 Male, age 80, left hemisphere 250.3
2515 Male, age 75, right hemisphere 65.3
2701 Female, age 91, right hemisphere 44.5
1905 Male, age 76, both hemispheres 10.4
Corticomedial amygdala
nTPM: 296.1
2829 Male, age 80, left hemisphere 444.9
2242 Female, age 91, right hemisphere 388.1
2535 Female, age 67, right hemisphere 325.1
2429 Female, age 94, left hemisphere 305.4
2428 Male, age 75, right hemisphere 157.5
2240 Male, age 76, both hemispheres 156.0
Lateral amygdala
nTPM: 174.6
2534 Female, age 94, left hemisphere 534.9
2256 Male, age 80, left hemisphere 175.3
2255 Female, age 91, right hemisphere 94.4
1883 Male, age 76, both hemispheres 90.3
2830 Female, age 67, right hemisphere 80.0
2516 Male, age 75, right hemisphere 72.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 94.8
Samples: 152

Max nTPM: 356.5
Min nTPM: 3.0
Std nTPM: 72.6
Median nTPM: 81.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 356.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 347.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 321.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 316.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 273.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 236.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 235.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 235.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 234.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 231.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 229.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 226.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 204.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 204.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 196.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 191.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 190.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 184.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 183.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 182.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 180.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 167.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 166.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 161.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 159.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 158.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 152.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 150.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 145.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 144.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 144.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 143.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 141.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 139.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 133.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 127.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 126.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 123.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 121.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 120.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 120.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 119.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 119.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 112.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 111.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 110.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 109.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 107.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 104.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 98.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 93.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 93.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 92.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 92.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 91.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 90.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 89.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 89.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 86.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 84.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 84.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 81.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 75.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 75.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 73.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 73.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 69.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 68.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 67.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 67.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 65.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 63.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 61.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 61.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 60.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 56.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 54.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 53.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 52.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 51.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 49.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 48.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 48.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 46.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 45.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 45.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 44.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 43.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 43.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 42.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 41.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 38.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 36.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 35.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 34.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 34.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 31.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 31.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 31.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 30.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 30.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 28.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 28.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 28.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 27.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 26.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 26.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 26.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 26.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 25.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 24.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 23.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 23.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 22.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 21.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 18.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 18.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 17.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 16.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 16.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 15.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 14.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 13.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 7.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 5.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

464.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 464.0
FF:10151-102I7 76 years, female 464.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.0
Pig sample Sample description nTPM
Amygdala
nTPM: 150.0
Samples: 4

Max nTPM: 231.5
Min nTPM: 111.7
Sample A Female 231.5
Sample B Female 118.5
Sample C Male 138.3
Sample D Male 111.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 275.5
Samples: 4

Max nTPM: 288.4
Min nTPM: 250.7
Sample A Male 288.4
Sample B Male 282.1
Sample C Female 250.7
Sample D Female 280.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.0
390 Antisense, RP_Baylor_102756, Mouse strain C57BL/6J (56 days, male) 11.0
391 Antisense, RP_Baylor_102756, Mouse strain C57BL/6J (56 days, male) 8.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org