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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Inner nuclear layer:
Medium
Inner plexiform layer:
Low
Limiting membrane:
Medium
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
183.0
nTPM
GTEx:
183.0
nTPM
FANTOM5:
135.6
Scaled Tags Per Million
Pig:
38.9
nTPM
Mouse:
100.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB046032
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Medium
Outer plexiform layer
High
Inner nuclear layer
Medium
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA061138
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Medium
Outer plexiform layer
High
Inner nuclear layer
Medium
Inner plexiform layer
Medium
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
183.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 183.0
Samples: 105
Max nTPM: 294.0
Min nTPM: 78.1
Std nTPM: 44.5
Median nTPM:
308_1
70 years, female
294.0
315_1
62 years, female
287.7
264_1
73 years, female
282.3
414_1
84 years, female
279.8
501_1
88 years, male
266.4
452_1
88 years, female
259.9
137_1
83 years, male
257.9
413_1
59 years, female
255.7
35_1
74 years, female
254.7
313_1
79 years, female
254.7
254_1
77 years, female
250.9
288_1
66 years, female
244.3
41_1
94 years, female
241.4
351_1
91 years, male
241.0
2_1
77 years, female
239.3
117_1
61 years, male
235.6
506_1
65 years, male
234.1
307_1
66 years, female
230.4
394_1
75 years, female
229.2
120_1
70 years, female
228.5
425_1
59 years, female
223.0
17_1
71 years, male
221.5
314_1
67 years, male
219.0
295_1
61 years, female
218.3
142_1
61 years, female
217.7
42_1
85 years, male
217.5
173_1
67 years, male
216.5
406_1
79 years, male
211.0
4_1
88 years, female
207.2
145_1
84 years, male
206.6
319_1
81 years, male
204.9
499_1
55 years, female
204.2
491_1
89 years, female
203.3
503_1
68 years, male
200.8
89_1
63 years, male
199.2
324_1
76 years, male
195.1
243_1
75 years, male
193.0
266_1
85 years, male
192.1
109_1
81 years, female
191.8
126_1
63 years, male
191.4
375_1
74 years, female
190.5
376_1
75 years, female
189.5
32_1
67 years, male
188.3
379_1
60 years, male
185.2
490_1
67 years, female
182.7
229_1
69 years, female
179.9
495_1
57 years, female
179.8
99_1
64 years, male
177.5
317_1
60 years, male
176.8
172_1
72 years, female
176.3
349_1
83 years, male
175.9
177_1
74 years, male
175.1
6_1
73 years, female
174.5
286_1
68 years, female
174.2
119_1
70 years, female
173.5
246_1
77 years, male
172.6
237_1
82 years, male
171.6
356_1
87 years, female
171.2
149_1
88 years, male
169.5
9_1
66 years, female
167.6
526_1
61 years, male
166.4
377_1
82 years, female
165.6
386_1
76 years, male
164.8
265_1
87 years, male
163.3
384_1
83 years, male
163.2
81_1
67 years, male
162.3
335_1
73 years, female
161.8
320_1
89 years, female
161.5
153_1
70 years, female
161.2
466_1
57 years, female
160.8
468_1
89 years, male
160.7
353_1
82 years, female
157.9
115_1
83 years, male
156.2
292_1
71 years, male
156.2
316_1
62 years, male
153.8
348_1
84 years, male
153.5
18_1
88 years, male
153.4
189_1
76 years, male
152.5
163_1
78 years, male
152.3
347_1
72 years, male
151.5
404_1
82 years, female
150.6
139_1
64 years, female
149.0
396_1
62 years, male
149.0
318_1
68 years, male
148.6
321_1
62 years, female
146.5
415_1
77 years, female
145.6
217_1
76 years, male
144.1
405_1
91 years, male
143.8
311_1
78 years, male
142.7
43_1
64 years, female
142.2
480_1
63 years, male
141.3
447_1
81 years, male
141.0
389_1
86 years, female
136.3
291_1
76 years, male
133.8
517_1
88 years, male
133.2
350_1
84 years, female
124.7
355_1
70 years, female
123.2
293_1
68 years, female
123.0
354_1
81 years, female
121.4
162_1
79 years, female
121.1
518_1
75 years, female
119.4
322_1
76 years, male
117.9
218_1
71 years, female
104.3
352_1
62 years, male
102.1
251_1
78 years, male
78.1
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
