We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LGALS4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • LGALS4
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: High
Goblet cells: High
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:672.8 nTPM
HPA:672.8 nTPM
GTEx:575.1 nTPM
FANTOM5:3458.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031184Antibody HPA031185Antibody HPA031186Antibody CAB025653
Endocrine cells High---
Enterocytes High---
Enterocytes - Microvilli High---
Glandular cells -MediumMediumHigh
Goblet cells High---
Paneth cells Not detected---









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

672.8
overview
Male, age 65
Small intestine sample 232
nTPM: 624.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 837.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 702.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 526.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

575.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 575.1
Samples: 187

Max nTPM: 2048.4
Min nTPM: 1.0
Std nTPM: 552.2
Median nTPM: 435.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2048.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1983.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1938.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1912.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1891.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1793.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1769.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1755.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1726.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1641.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1616.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1611.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1583.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1582.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1424.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1405.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1396.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1383.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1383.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1381.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1372.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1369.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1362.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1361.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1342.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1311.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1290.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1245.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1227.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1190.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1167.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1165.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 1130.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1125.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1117.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1112.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1101.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1101.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1100.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1093.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1074.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1072.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1061.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1050.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1039.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1035.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 989.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 981.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 980.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 928.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 928.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 913.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 897.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 889.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 884.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 875.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 874.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 842.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 821.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 804.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 788.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 775.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 761.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 758.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 709.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 701.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 699.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 693.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 691.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 680.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 676.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 673.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 660.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 640.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 578.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 564.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 553.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 552.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 548.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 540.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 532.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 529.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 523.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 515.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 509.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 507.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 507.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 505.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 503.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 492.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 482.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 442.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 438.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 435.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 418.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 389.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 383.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 381.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 379.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 367.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 357.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 355.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 344.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 339.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 332.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 287.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 280.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 276.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 257.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 253.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 242.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 231.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 225.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 215.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 200.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 188.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 181.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 171.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 169.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 165.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 163.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 154.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 152.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 152.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 141.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 133.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 129.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 128.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 124.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 121.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 109.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 93.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 91.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 88.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 86.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 82.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 80.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 79.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 78.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 75.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 70.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 68.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 65.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 65.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 59.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 59.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 58.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 56.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 56.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 52.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 45.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 42.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 42.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 38.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 37.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 33.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 32.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 30.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 25.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 23.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 23.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 22.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 22.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 19.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 17.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 16.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 16.2
GTEX-1192X-2526-SM-59868 50-59 years, male 13.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 12.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 11.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 10.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 9.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 9.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 8.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 7.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 6.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 6.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 6.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 5.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 4.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 4.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3458.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3458.3
FF:10024-101D6 15,40,85 years, mixed 3458.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org