We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCG2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SCG2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:32.7 nTPM
HPA Brain:186.3 nTPM
GTEx:32.7 nTPM
FANTOM5:110.3 Scaled Tags Per Million
Pig:69.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 63.0
2565 Male, age 75, midline 78.8
2194 Female, age 79, both hemispheres 65.1
1981 Female, age 72, midline 61.9
2048 Male, age 55, midline 57.1
2816 Male, age 47, midline 52.1
Cervical spinal cord, dorsal horn
nTPM: 186.3
2721 Male, age 90, both hemispheres 378.0
2297 Male, age 75, both hemispheres 270.8
2069 Male, age 47, both hemispheres 252.7
1877 Male, age 55, unknown 124.7
2296 Male, age 66, both hemispheres 46.5
2173 Female, age 72, unknown 44.9
Cervical spinal cord, ventral horn
nTPM: 37.2
2068 Male, age 55, unknown 60.9
2480 Male, age 75, both hemispheres 42.4
2295 Male, age 66, both hemispheres 35.8
2809 Male, age 90, both hemispheres 29.0
2820 Female, age 79, both hemispheres 28.9
2098 Female, age 72, unknown 26.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 32.7
Samples: 159

Max nTPM: 304.9
Min nTPM: 0.8
Std nTPM: 49.1
Median nTPM: 13.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 304.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 286.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 276.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 168.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 163.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 145.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 144.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 121.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 117.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 104.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 99.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 94.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 93.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 88.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 87.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 86.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 82.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 79.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 74.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 73.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 69.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 69.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 67.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 65.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 63.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 62.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 58.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 57.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 54.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 51.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 44.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 43.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 41.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 39.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 38.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 38.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 37.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 36.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 35.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 34.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 34.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 32.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 32.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 31.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 31.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 31.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 30.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 29.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 29.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 26.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 25.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 25.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 25.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 24.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 23.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 22.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 21.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 21.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 21.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 21.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 20.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 19.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 19.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 17.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 17.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 16.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 16.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 15.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 15.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 15.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 14.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 14.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 14.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 14.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 14.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 14.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 13.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 13.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 12.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 12.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 11.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 11.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 11.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 11.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 11.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 11.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 11.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 11.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 11.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 10.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 10.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 10.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 10.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 10.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 9.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 9.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 8.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 7.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 7.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 7.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 7.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 7.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 7.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 7.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 7.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 7.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 7.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 6.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 6.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 6.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 6.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 5.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 5.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 5.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 5.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 5.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 5.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 5.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 5.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 5.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 4.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 4.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 4.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 4.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 4.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 4.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 4.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 3.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 3.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 0.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 110.3
FF:10181-103D1 60 years, female 135.4
FF:10159-103A6 76 years, female 85.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 69.1
Samples: 4

Max nTPM: 134.8
Min nTPM: 6.4
Sample A Female 134.8
Sample B Female 45.4
Sample C Male 6.4
Sample D Male 89.8
Ventral spinal cord
nTPM: 53.3
Samples: 4

Max nTPM: 73.3
Min nTPM: 27.3
Sample A Female 46.8
Sample B Female 73.3
Sample C Male 65.6
Sample D Male 27.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org