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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:6550.6 nTPM
HPA:6550.6 nTPM
GTEx:3144.7 nTPM
FANTOM5:1066.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047894Antibody HPA048334
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells Low-
Goblet cells -Not detected
Paneth cells -High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6550.6
overview
Male, age 65
Small intestine sample 232
nTPM: 6228.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 6422.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 6710.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 6841

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3144.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 3144.7
Samples: 187

Max nTPM: 16440.4
Min nTPM: 0.5
Std nTPM: 3495.2
Median nTPM: 1849.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 16440.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 16097.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 13711.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 13584.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 13577.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 12079.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 12028.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 11406.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 11220.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 10684.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 10144.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 9595.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 9558.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 9177.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 8931.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 8766.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 8576.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 8070.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 7951.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 7886.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 7783.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 7740.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 7289.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 7286.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 7233.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 7185.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 7111.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 6794.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 6449.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 6395.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 6352.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 6111.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 6030.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 6019.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 5983.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 5927.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 5869.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 5840.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 5714.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 5647.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 5434.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 5178.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 5138.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 5102.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 5053.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 5049.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 4946.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 4859.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 4731.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 4718.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 4233.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 4181.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 4158.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4076.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 4004.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3888.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 3818.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3816.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3791.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3695.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 3532.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 3493.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3480.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 3441.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3376.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3257.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3232.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3122.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 3091.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 3072.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3021.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 3005.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2953.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2832.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2690.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2685.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2673.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 2649.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2621.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2528.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2494.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2472.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2448.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2095.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2083.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2068.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2050.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2048.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2006.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1999.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1981.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1923.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1860.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1849.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1820.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1794.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1785.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1778.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1745.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1716.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1683.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1654.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1626.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1625.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1624.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1531.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1490.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1487.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1479.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1460.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1426.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1357.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1307.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1284.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1278.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1214.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1184.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1176.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1173.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1161.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1154.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1131.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1054.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 951.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 908.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 891.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 877.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 808.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 749.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 714.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 679.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 662.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 643.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 597.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 550.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 494.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 468.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 451.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 431.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 414.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 406.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 374.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 338.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 330.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 327.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 322.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 299.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 202.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 181.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 169.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 125.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 121.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 113.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 101.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 92.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 91.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 91.4
GTEX-1192X-2526-SM-59868 50-59 years, male 81.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 81.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 70.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 46.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 45.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 43.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 42.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 25.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 18.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 16.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 16.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 12.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 10.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 10.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 9.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 8.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 7.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 7.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 7.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 6.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 5.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 5.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1066.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1066.3
FF:10024-101D6 15,40,85 years, mixed 1066.3

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