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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Medium
Enterocytes - Gradient: Descending
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2680.6 nTPM
HPA:353.8 nTPM
GTEx:2680.6 nTPM
FANTOM5:602.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045549Antibody HPA045579
Endocrine cells -Not detected
Enterocytes -Medium
Enterocytes - Gradient -Descending
Enterocytes - Microvilli -Not detected
Glandular cells Medium-
Goblet cells -High
Paneth cells -High




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.8
overview
Male, age 65
Small intestine sample 232
nTPM: 75.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 93
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 927.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 319.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2680.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2680.6
Samples: 187

Max nTPM: 56601.5
Min nTPM: 0.0
Std nTPM: 6486.3
Median nTPM: 189.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 56601.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 35408.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 31106.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 23537.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 21193.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 18094.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 14451.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 14411.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 13610.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 12308.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 12075.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 11220.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 10497.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 10362.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 9979.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 9848.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 9837.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 9722.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 9469.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 8589.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 7741.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 7669.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 7607.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 7246.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 6920.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 6417.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 5510.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 5294.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 5118.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 4842.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 4647.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 4554.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 4491.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 4356.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3773.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 3601.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3571.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3506.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3362.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 3171.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2584.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2573.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2567.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2374.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 2174.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2144.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2128.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2060.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1938.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1873.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1705.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1668.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1658.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1622.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1507.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1432.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1375.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1219.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1168.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 913.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 898.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 788.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 774.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 662.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 635.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 620.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 612.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 610.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 601.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 586.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 559.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 543.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 502.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 465.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 458.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 443.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 420.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 415.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 413.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 387.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 387.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 374.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 361.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 341.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 338.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 278.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 275.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 251.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 237.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 236.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 234.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 230.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 222.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 189.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 180.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 175.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 169.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 155.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 154.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 150.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 149.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 145.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 142.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 125.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 115.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 113.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 111.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 101.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 92.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 91.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 87.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 82.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 77.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 75.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 66.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 50.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 47.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 40.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 40.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 38.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 38.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 38.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 37.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 33.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 32.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 31.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 31.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 29.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 26.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 23.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 23.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 22.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 19.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 18.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 18.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 15.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 15.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 15.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 14.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 14.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 13.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 12.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 11.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 11.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 11.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 8.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 8.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 7.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 7.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 7.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 6.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 6.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 6.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 6.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 5.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 5.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 4.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 4.3
GTEX-1192X-2526-SM-59868 50-59 years, male 4.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 3.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 0.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 0.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

602.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 602.5
FF:10024-101D6 15,40,85 years, mixed 602.5

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