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GARIN2
HPA
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  • GARIN2
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GARIN2
Synonyms C14orf54, FAM71D, GARI-L2
Gene descriptioni

Full gene name according to HGNC.

Golgi associated RAB2 interactor family member 2
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q23.3
Chromosome location (bp) 67189393 - 67228550
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

12
Ensembl ENSG00000172717 (version 109)
Entrez gene 161142
HGNC HGNC:20101
UniProt Q8N9W8 (UniProt - Evidence at protein level)
neXtProt NX_Q8N9W8
GeneCards GARIN2
Antibodypedia GARIN2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Seems to play a role in sperm motility.... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GARIN2-201
ENSP00000436280
ENST00000524532
E9PPX0
[Direct mapping] Golgi-associated RAB2 interactor protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
65 aa
7.5 kDa
No 0
GARIN2-203
ENSP00000433183
ENST00000530728
E9PM27
[Direct mapping] Golgi-associated RAB2 interactor protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
77 aa
8.8 kDa
No 0
GARIN2-205
ENSP00000432195
ENST00000534174
Q8N9W8
[Direct mapping] Golgi associated RAB2 interactor protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005929 [cilium]
GO:0030317 [flagellated sperm motility]
GO:0031514 [motile cilium]
GO:0042995 [cell projection]
GO:0097225 [sperm midpiece]
Show all
400 aa
44.6 kDa
No 0
GARIN2-208
ENSP00000451960
ENST00000556117
H0YJQ5
[Direct mapping] Golgi-associated RAB2 interactor protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
52 aa
5.7 kDa
No 0
GARIN2-210
ENSP00000483154
ENST00000612183
Q8N9W8
[Direct mapping] Golgi associated RAB2 interactor protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0005929 [cilium]
GO:0030317 [flagellated sperm motility]
GO:0031514 [motile cilium]
GO:0042995 [cell projection]
GO:0097225 [sperm midpiece]
Show all
422 aa
47.1 kDa
No 0
GARIN2-211
ENSP00000512992
ENST00000696955
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0030317 [flagellated sperm motility]
GO:0097225 [sperm midpiece]
Show all
417 aa
46.5 kDa
No 0
GARIN2-212
ENSP00000512993
ENST00000696956
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Show all
384 aa
42.8 kDa
No 1
GARIN2-213
ENSP00000512994
ENST00000696957
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
413 aa
46.1 kDa
No 0
GARIN2-214
ENSP00000512995
ENST00000696958
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
417 aa
46.5 kDa
No 0
GARIN2-215
ENSP00000512996
ENST00000696959
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
147 aa
16.6 kDa
No 0
GARIN2-216
ENSP00000512997
ENST00000696960
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
252 aa
28.4 kDa
No 0
GARIN2-217
ENSP00000512998
ENST00000696961
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
398 aa
44.4 kDa
No 0

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