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CFL1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1088.4 nTPM
HPA:1088.4 nTPM
GTEx:798.8 nTPM
FANTOM5:2610.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053761Antibody CAB033687Antibody CAB037077
Glandular cells HighHighMedium







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1088.4
overview
Male, age 65
Small intestine sample 232
nTPM: 1192.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1090.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1030.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1040.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

798.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 798.8
Samples: 187

Max nTPM: 2185.9
Min nTPM: 313.7
Std nTPM: 332.0
Median nTPM: 715.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2185.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2051.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1708.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1637.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1518.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1498.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1472.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1452.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1447.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1421.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1415.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1380.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1365.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1364.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1300.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1256.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1245.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1240.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1221.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1216.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1201.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1192.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1192.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1183.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1178.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1173.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1166.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1162.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1159.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1146.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1145.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1139.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1128.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1127.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1112.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1099.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1088.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1078.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1075.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1068.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1066.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1054.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1043.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1038.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1020.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1011.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 994.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 994.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 989.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 984.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 982.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 979.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 970.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 945.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 941.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 931.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 918.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 911.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 910.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 904.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 885.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 878.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 872.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 870.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 870.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 867.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 864.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 850.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 843.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 832.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 831.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 831.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 824.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 821.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 806.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 799.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 791.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 787.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 783.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 781.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 779.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 773.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 772.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 768.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 766.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 762.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 753.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 748.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 741.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 736.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 736.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 722.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 720.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 715.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 713.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 699.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 691.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 689.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 688.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 687.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 687.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 686.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 674.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 674.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 670.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 669.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 667.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 665.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 659.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 657.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 654.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 651.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 651.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 648.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 647.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 646.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 646.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 645.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 637.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 636.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 634.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 629.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 629.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 616.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 604.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 602.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 599.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 597.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 591.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 587.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 575.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 573.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 573.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 568.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 566.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 563.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 562.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 555.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 552.2
GTEX-1192X-2526-SM-59868 50-59 years, male 547.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 545.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 540.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 533.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 531.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 530.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 524.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 512.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 507.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 507.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 504.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 504.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 502.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 502.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 495.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 495.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 491.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 483.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 477.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 475.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 473.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 471.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 471.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 470.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 465.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 461.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 461.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 458.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 449.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 445.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 433.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 431.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 430.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 429.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 424.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 418.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 418.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 416.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 399.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 397.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 386.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 382.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 376.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 369.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 332.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 323.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 319.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 313.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2610.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2610.9
FF:10024-101D6 15,40,85 years, mixed 2610.9

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