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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1895.1 nTPM
HPA Brain:544.0 nTPM
GTEx:1895.1 nTPM
FANTOM5:958.1 Scaled Tags Per Million
Pig:220.7 nTPM
Mouse:1147.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

544.0
Sample id Sample description nTPM
Amygdala
nTPM: 544.0
2695 Female, age 67, right hemisphere 811.6
2814 Male, age 76, right hemisphere 574.0
2517 Female, age 94, left hemisphere 473.8
2514 Male, age 75, right hemisphere 457.9
1987 Female, age 91, left hemisphere 402.9
Basal amygdala
nTPM: 451.2
2827 Female, age 67, right hemisphere 610.1
2609 Male, age 75, right hemisphere 463.5
2685 Female, age 94, left hemisphere 423.1
1955 Male, age 76, both hemispheres 421.8
2243 Female, age 91, right hemisphere 395.7
2110 Male, age 80, left hemisphere 392.9
Central amygdala
nTPM: 495.5
2826 Female, age 94, left hemisphere 778.8
1905 Male, age 76, both hemispheres 472.1
2239 Male, age 80, left hemisphere 438.7
2515 Male, age 75, right hemisphere 423.9
2701 Female, age 91, right hemisphere 364.1
Corticomedial amygdala
nTPM: 424.2
2535 Female, age 67, right hemisphere 480.7
2429 Female, age 94, left hemisphere 445.3
2240 Male, age 76, both hemispheres 440.1
2829 Male, age 80, left hemisphere 421.6
2428 Male, age 75, right hemisphere 387.2
2242 Female, age 91, right hemisphere 370.5
Lateral amygdala
nTPM: 481.2
2830 Female, age 67, right hemisphere 744.8
2534 Female, age 94, left hemisphere 579.8
2516 Male, age 75, right hemisphere 543.5
1883 Male, age 76, both hemispheres 362.3
2256 Male, age 80, left hemisphere 357.3
2255 Female, age 91, right hemisphere 299.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1895.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1895.1
Samples: 152

Max nTPM: 5905.8
Min nTPM: 913.2
Std nTPM: 812.5
Median nTPM: 1708.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5905.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5820.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4903.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4455.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3888.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3817.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3422.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3320.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3282.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3209.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3148.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3049.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2948.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2858.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2737.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2683.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2645.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2636.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2631.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2624.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2553.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2540.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2527.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2513.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2481.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2461.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2444.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2410.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2385.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2341.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2248.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2211.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2205.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2202.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2143.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2140.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2116.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2113.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2112.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2104.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2097.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2092.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2090.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2072.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2041.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2034.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2030.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2028.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2025.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1995.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1943.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1929.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1924.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1921.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1920.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1915.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1913.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1891.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1880.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1876.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1870.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1861.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1831.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1830.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1827.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1820.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1815.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1815.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1812.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1808.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1797.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1791.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1790.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1759.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1752.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1712.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1704.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1700.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1685.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1646.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1630.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1627.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1613.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1596.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1594.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1587.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1562.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1558.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1552.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1551.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1551.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1541.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1537.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1531.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1531.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1529.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1514.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1502.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1494.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1494.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1486.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1471.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1471.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1468.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1464.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1457.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1447.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1440.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1434.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1434.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1398.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1393.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1393.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1388.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1375.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1353.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1352.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1348.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1322.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1310.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1305.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1298.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1291.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1284.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1255.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1250.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1250.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1242.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1240.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1238.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1202.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1199.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1191.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1186.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1179.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1174.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1167.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1167.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1162.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1152.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1146.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1142.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1142.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1129.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1098.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1086.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1064.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1060.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1030.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1006.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 973.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 913.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

958.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 958.1
FF:10151-102I7 76 years, female 958.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.7
Pig sample Sample description nTPM
Amygdala
nTPM: 220.7
Samples: 4

Max nTPM: 277.9
Min nTPM: 106.6
Sample A Female 273.5
Sample B Female 277.9
Sample C Male 224.6
Sample D Male 106.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1147.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1147.1
Samples: 4

Max nTPM: 1239.4
Min nTPM: 1057.9
Sample A Male 1057.9
Sample B Male 1150.6
Sample C Female 1239.4
Sample D Female 1140.6

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