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RPL38
HPA
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1209.8 nTPM
HPA:636.5 nTPM
GTEx:1209.8 nTPM
FANTOM5:460.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052543
Glandular cells Medium

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

636.5
overview
Male, age 65
Small intestine sample 232
nTPM: 779.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 636.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 553.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 576.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1209.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1209.8
Samples: 187

Max nTPM: 2646.0
Min nTPM: 577.0
Std nTPM: 381.9
Median nTPM: 1138.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2646.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2626.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2551.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2342.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2252.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2098.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1993.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1990.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1974.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1965.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1932.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1906.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1866.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 1856.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1810.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1772.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1743.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1731.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1726.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1717.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1670.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1606.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1596.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1589.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1576.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1575.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1575.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1561.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1558.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1555.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1554.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1549.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1529.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1513.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1511.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1503.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1470.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1461.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1443.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1441.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1439.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1420.6
GTEX-1192X-2526-SM-59868 50-59 years, male 1417.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1414.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1406.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1400.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1384.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1382.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1380.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1376.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1333.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1333.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1331.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1329.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1328.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1320.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1318.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1317.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1317.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1316.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1316.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1312.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1305.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1296.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1292.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1292.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1285.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1281.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1279.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1277.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1274.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1268.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1267.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1266.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1259.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1254.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1245.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1241.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1238.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1237.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1225.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1221.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1198.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1195.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1194.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1183.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1174.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1152.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1151.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1151.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1148.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1144.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1140.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1138.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1131.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1125.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1115.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1111.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1107.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1101.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1101.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1099.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1098.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1097.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1095.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1089.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1083.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1078.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1077.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1075.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1072.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1070.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1062.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1058.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1045.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1044.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1031.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1029.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1027.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1023.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1020.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1015.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1013.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 999.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 998.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 988.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 985.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 980.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 973.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 970.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 962.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 961.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 960.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 958.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 953.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 950.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 947.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 946.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 944.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 943.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 942.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 940.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 926.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 926.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 921.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 914.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 911.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 903.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 896.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 893.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 882.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 878.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 877.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 876.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 874.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 868.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 863.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 860.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 851.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 850.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 836.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 835.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 820.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 818.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 805.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 795.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 793.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 790.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 782.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 782.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 779.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 778.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 763.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 763.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 749.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 740.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 733.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 732.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 730.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 726.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 714.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 711.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 707.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 706.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 694.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 649.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 577.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

460.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 460.0
FF:10024-101D6 15,40,85 years, mixed 460.0

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