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ARV1
HPA
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  • ARV1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ARV1
Synonyms
Gene descriptioni

Full gene name according to HGNC.

ARV1 homolog, fatty acid homeostasis modulator
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q42.2
Chromosome location (bp) 230978981 - 231000733
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000173409 (version 109)
Entrez gene 64801
HGNC HGNC:29561
UniProt Q9H2C2 (UniProt - Evidence at protein level)
neXtProt NX_Q9H2C2
GeneCards ARV1
Antibodypedia ARV1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role as a mediator in the endoplasmic reticulum (ER) cholesterol and bile acid homeostasis 1, 2, 3. Participates in sterol transport out of the ER and distribution into plasma membranes 4.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cholesterol metabolism, Lipid metabolism, Lipid transport, Steroid metabolism, Sterol metabolism, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

this gene encodes a transmembrane protein that contains a conserved zinc ribbon motif at the N- terminus. A similar protein in mouse is thought to function in fatty acid homeostasis. Mutations in this gene are associated with early infantile epileptic encephalopathy 38. [provided by RefSeq, Nov 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ARV1-201
ENSP00000312458
ENST00000310256
Q9H2C2
[Direct mapping] Protein ARV1
Show all
A0A024R3V6
[Target identity:100%; Query identity:100%] Protein ARV
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006629 [lipid metabolic process]
GO:0006665 [sphingolipid metabolic process]
GO:0006695 [cholesterol biosynthetic process]
GO:0006869 [lipid transport]
GO:0008202 [steroid metabolic process]
GO:0008203 [cholesterol metabolic process]
GO:0008206 [bile acid metabolic process]
GO:0015248 [sterol transporter activity]
GO:0016020 [membrane]
GO:0016125 [sterol metabolic process]
GO:0030301 [cholesterol transport]
GO:0032366 [intracellular sterol transport]
GO:0032383 [regulation of intracellular cholesterol transport]
GO:0032541 [cortical endoplasmic reticulum]
GO:0090181 [regulation of cholesterol metabolic process]
GO:0097036 [regulation of plasma membrane sterol distribution]
Show all
271 aa
31.1 kDa
No 5
ARV1-202
ENSP00000355618
ENST00000366658
A0A0A0MRI7
[Direct mapping] Protein ARV
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006869 [lipid transport]
GO:0016020 [membrane]
GO:0016125 [sterol metabolic process]
GO:0032366 [intracellular sterol transport]
GO:0032541 [cortical endoplasmic reticulum]
GO:0097036 [regulation of plasma membrane sterol distribution]
Show all
231 aa
26.4 kDa
No 5
ARV1-203
ENSP00000394547
ENST00000435927
H7C0E7
[Direct mapping] Protein ARV
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006869 [lipid transport]
GO:0016020 [membrane]
GO:0016125 [sterol metabolic process]
GO:0032366 [intracellular sterol transport]
GO:0032541 [cortical endoplasmic reticulum]
GO:0097036 [regulation of plasma membrane sterol distribution]
Show all
291 aa
33.1 kDa
No 6
ARV1-204
ENSP00000416039
ENST00000450711
H7C484
[Direct mapping] Protein ARV
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006869 [lipid transport]
GO:0016020 [membrane]
GO:0016125 [sterol metabolic process]
GO:0032366 [intracellular sterol transport]
GO:0032541 [cortical endoplasmic reticulum]
GO:0097036 [regulation of plasma membrane sterol distribution]
Show all
268 aa
30.7 kDa
No 5

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