MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.3 nTPM
HPA Brain:28.3 nTPM
GTEx:59.3 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:62.8 nTPM
Mouse:13.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
2586 Male, age 75, left hemisphere 42.0
2828 Female, age 72, unknown 31.4
2019 Male, age 18, unknown 30.1
2666 Male, age 74, left hemisphere 29.8
1870 Female, age 42, unknown 23.2
2219 Male, age 76, both hemispheres 22.7
1827 Male, age 72, unknown 22.6
1833 Male, age 53, unknown 19.8
2411 Female, age 72, unknown 19.4
1830 Male, age 51, unknown 19.0
Dorsal raphe nucleus
nTPM: 22.7
1828 Male, age 53, unknown 25.8
2016 Female, age 72, unknown 25.5
2047 Male, age 72, unknown 24.2
2750 Male, age 76, both hemispheres 20.0
2298 Female, age 72, unknown 18.0
Inferior colliculus
nTPM: 21.1
1890 Male, age 53, unknown 27.3
1848 Female, age 42, unknown 20.4
2097 Female, age 72, unknown 20.4
2849 Male, age 72, unknown 16.3
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 23.1
1795 Male, age 51, unknown 25.9
2502 Female, age 75, unknown 22.2
1947 Male, age 18, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 17.8
2850 Male, age 76, both hemispheres 18.6
2464 Female, age 72, unknown 17.9
1831 Male, age 72, unknown 17.5
1840 Male, age 53, unknown 17.2
Periaquaductal grey, lateral
nTPM: 20.1
2140 Male, age 76, both hemispheres 21.6
2272 Male, age 74, both hemispheres 20.6
2053 Male, age 18, unknown 18.2
Pretectal area
nTPM: 24.9
2007 Male, age 72, unknown 33.6
1817 Female, age 42, unknown 32.1
1815 Male, age 53, unknown 28.2
1816 Male, age 51, unknown 28.2
1944 Female, age 72, unknown 26.7
2407 Male, age 75, both hemispheres 24.0
2667 Female, age 75, unknown 22.5
2316 Male, age 76, right hemisphere 21.8
2273 Male, age 74, both hemispheres 21.4
2224 Female, age 72, unknown 18.4
2825 Male, age 18, unknown 17.3
Red nucleus
nTPM: 27.8
2785 Male, age 18, unknown 33.0
2588 Male, age 74, left hemisphere 31.9
2503 Female, age 72, unknown 31.6
2769 Male, age 72, unknown 31.3
2227 Male, age 72, unknown 28.8
2584 Male, age 75, left hemisphere 28.4
2725 Female, age 75, unknown 27.8
1954 Female, age 42, unknown 27.4
1865 Male, age 51, unknown 25.4
1821 Female, age 72, unknown 24.5
1904 Male, age 53, unknown 23.6
2823 Male, age 76, right hemisphere 19.5
Substantia nigra
nTPM: 28.3
1916 Female, age 42, unknown 37.4
1851 Male, age 51, unknown 32.0
2699 Male, age 18, unknown 30.1
2665 Male, age 74, both hemispheres 29.5
1941 Male, age 53, unknown 28.9
1889 Female, age 72, unknown 28.6
2583 Male, age 75, right hemisphere 25.5
2409 Female, age 72, unknown 24.5
2590 Female, age 75, unknown 24.2
2241 Male, age 72, unknown 22.5
Superior colliculus
nTPM: 22.8
2668 Female, age 75, unknown 29.3
2664 Male, age 75, both hemispheres 25.1
2261 Male, age 18, unknown 24.6
2087 Female, age 72, unknown 24.5
1995 Male, age 72, unknown 22.9
1913 Female, age 42, unknown 22.7
2587 Male, age 74, left hemisphere 22.5
1796 Male, age 53, unknown 20.8
1839 Male, age 51, unknown 19.6
1895 Male, age 76, right hemisphere 16.5
Ventral tegmental area
nTPM: 23.1
1915 Female, age 42, unknown 27.8
1942 Male, age 51, unknown 25.7
2410 Female, age 72, unknown 24.4
2021 Male, age 53, unknown 21.2
2218 Male, age 76, both hemispheres 20.3
2223 Female, age 72, unknown 19.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.3
Samples: 139

Max nTPM: 168.5
Min nTPM: 23.2
Std nTPM: 23.5
Median nTPM: 55.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 168.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 132.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 129.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 128.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 109.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 103.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 103.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 98.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 95.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 93.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 93.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.0
FF:10158-103A5 76 years, female 10.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 70.7
Min nTPM: 52.8
Sample A Female 70.7
Sample B Female 57.6
Sample C Male 52.8
Sample D Male 54.3
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 74.2
Min nTPM: 34.0
Sample A Female 74.2
Sample B Female 52.7
Sample C Male 56.1
Sample D Male 34.0
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 43.9
Min nTPM: 39.2
Sample B Female 39.2
Sample C Male 43.9
Sample D Male 39.8
Superior colliculi
nTPM: 62.8
Samples: 4

Max nTPM: 74.5
Min nTPM: 49.6
Sample A Female 65.4
Sample B Female 74.5
Sample C Male 61.8
Sample D Male 49.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.1
Sample A Male 15.8
Sample B Male 11.5
Sample C Female 10.1
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70723531 Antisense, RP_050705_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1
73512186 Antisense, RP_050705_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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