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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Medium
Goblet cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:230.7 nTPM
HPA:230.7 nTPM
GTEx:95.8 nTPM
FANTOM5:204.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053942
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Medium
Goblet cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.7
overview
Male, age 65
Small intestine sample 232
nTPM: 240.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 279.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 171.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 231.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 95.8
Samples: 187

Max nTPM: 384.7
Min nTPM: 0.0
Std nTPM: 96.1
Median nTPM: 68.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 384.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 363.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 346.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 325.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 316.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 306.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 300.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 279.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 278.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 277.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 272.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 269.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 265.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 264.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 264.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 259.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 252.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 245.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 244.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 241.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 240.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 237.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 235.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 231.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 226.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 224.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 221.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 217.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 213.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 205.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 204.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 202.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 202.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 200.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 194.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 192.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 192.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 188.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 187.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 185.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 181.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 181.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 180.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 178.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 176.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 164.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 163.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 162.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 161.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 156.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 155.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 153.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 143.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 141.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 139.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 132.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 129.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 129.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 128.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 126.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 124.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 120.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 116.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 116.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 113.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 112.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 112.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 110.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 107.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 107.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 107.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 102.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 101.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 101.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 97.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 95.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 95.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 95.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 93.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 93.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 92.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 91.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 89.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 89.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 87.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 86.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 81.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 78.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 77.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 77.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 75.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 75.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 70.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 68.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 63.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 63.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 56.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 56.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 56.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 55.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 55.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 52.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 52.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 52.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 50.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 50.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 48.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 43.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 42.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 40.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 39.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 36.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 34.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 29.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 28.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 28.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 28.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 27.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 26.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 22.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 22.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 20.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 20.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 19.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 19.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 18.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 18.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 17.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 16.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 14.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 13.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 12.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 12.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 12.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 12.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 12.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 10.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 10.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 9.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 9.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 9.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 8.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 7.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 7.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 6.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 5.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 5.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 4.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 4.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 3.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 3.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.8
GTEX-1192X-2526-SM-59868 50-59 years, male 2.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 204.5
FF:10024-101D6 15,40,85 years, mixed 204.5

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