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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:94.3 nTPM
HPA Brain:70.9 nTPM
GTEx:94.3 nTPM
FANTOM5:96.7 Scaled Tags Per Million
Pig:124.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.9
Sample id Sample description nTPM
Amygdala
nTPM: 70.9
2814 Male, age 76, right hemisphere 91.4
2695 Female, age 67, right hemisphere 74.1
2514 Male, age 75, right hemisphere 71.3
2517 Female, age 94, left hemisphere 61.1
1987 Female, age 91, left hemisphere 56.6
Basal amygdala
nTPM: 60.5
1955 Male, age 76, both hemispheres 79.8
2243 Female, age 91, right hemisphere 67.1
2110 Male, age 80, left hemisphere 59.1
2609 Male, age 75, right hemisphere 58.3
2685 Female, age 94, left hemisphere 51.0
2827 Female, age 67, right hemisphere 47.5
Central amygdala
nTPM: 68.8
1905 Male, age 76, both hemispheres 78.1
2701 Female, age 91, right hemisphere 74.8
2826 Female, age 94, left hemisphere 70.7
2239 Male, age 80, left hemisphere 69.9
2515 Male, age 75, right hemisphere 50.6
Corticomedial amygdala
nTPM: 65.6
2240 Male, age 76, both hemispheres 84.4
2242 Female, age 91, right hemisphere 68.8
2429 Female, age 94, left hemisphere 64.0
2829 Male, age 80, left hemisphere 59.0
2535 Female, age 67, right hemisphere 58.9
2428 Male, age 75, right hemisphere 58.3
Lateral amygdala
nTPM: 63.5
1883 Male, age 76, both hemispheres 79.0
2534 Female, age 94, left hemisphere 73.7
2516 Male, age 75, right hemisphere 64.1
2256 Male, age 80, left hemisphere 60.9
2255 Female, age 91, right hemisphere 59.7
2830 Female, age 67, right hemisphere 43.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 94.3
Samples: 152

Max nTPM: 203.1
Min nTPM: 31.3
Std nTPM: 26.6
Median nTPM: 93.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 203.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 191.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 189.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 164.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 155.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 152.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 148.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 148.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 132.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 123.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 120.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 120.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 118.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 118.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 117.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 117.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 116.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 116.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 115.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 115.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 114.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 114.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 113.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 113.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 111.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 111.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 111.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 110.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 110.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 109.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 108.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 108.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 107.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 107.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 107.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 106.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 106.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 106.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 105.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 104.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 104.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 104.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 103.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 102.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 101.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 101.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 101.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 100.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 99.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 99.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 97.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 97.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 97.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 95.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 93.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 93.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 93.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 93.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 92.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 92.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 92.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 91.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 88.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 88.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 88.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 87.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 86.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 85.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 83.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 83.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 82.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 81.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 81.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 80.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 78.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 78.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 77.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 76.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 76.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 75.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 74.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 74.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 73.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 73.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 73.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 72.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 71.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 71.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 71.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 70.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 70.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 70.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 67.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 66.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 59.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 56.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 56.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 54.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 54.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 50.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 48.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 39.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 31.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.7
FF:10151-102I7 76 years, female 96.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.4
Pig sample Sample description nTPM
Amygdala
nTPM: 124.4
Samples: 4

Max nTPM: 153.1
Min nTPM: 85.1
Sample A Female 153.1
Sample B Female 133.7
Sample C Male 125.7
Sample D Male 85.1

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