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VEGFB
HPA
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  • VEGFB
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

VEGFB
Synonyms VEGFL, VRF
Gene descriptioni

Full gene name according to HGNC.

Vascular endothelial growth factor B
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
FDA approved drug targets
RAS pathway related proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q13.1
Chromosome location (bp) 64234584 - 64239264
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000173511 (version 109)
Entrez gene 7423
HGNC HGNC:12681
UniProt P49765 (UniProt - Evidence at protein level)
neXtProt NX_P49765
GeneCards VEGFB
Antibodypedia VEGFB antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Growth factor for endothelial cells. VEGF-B167 binds heparin and neuropilin-1 whereas the binding to neuropilin-1 of VEGF-B186 is regulated by proteolysis.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Growth factor, Heparin-binding, Mitogen
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the PDGF (platelet-derived growth factor)/VEGF (vascular endothelial growth factor) family. The VEGF family members regulate the formation of blood vessels and are involved in endothelial cell physiology. This member is a ligand for VEGFR-1 (vascular endothelial growth factor receptor 1) and NRP-1 (neuropilin-1). Studies in mice showed that this gene was co-expressed with nuclear-encoded mitochondrial genes and the encoded protein specifically controlled endothelial uptake of fatty acids. Alternatively spliced transcript variants encoding distinct isoforms have been identified. [provided by RefSeq, Sep 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
VEGFB-201
ENSP00000311127
ENST00000309422
P49765
[Direct mapping] Vascular endothelial growth factor B
Show all
Q7LAP4
[Target identity:100%; Query identity:100%] Vascular endothelial growth factor B; Vascular endothelial growth factor B isoform VEGF-B186
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
RAS pathway related proteins
Cancer-related genes
   Candidate cancer biomarkers
FDA approved drug targets
   Biotech drugs
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001666 [response to hypoxia]
GO:0001934 [positive regulation of protein phosphorylation]
GO:0001938 [positive regulation of endothelial cell proliferation]
GO:0002040 [sprouting angiogenesis]
GO:0005172 [vascular endothelial growth factor receptor binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0006493 [protein O-linked glycosylation]
GO:0007165 [signal transduction]
GO:0007507 [heart development]
GO:0008083 [growth factor activity]
GO:0008201 [heparin binding]
GO:0008284 [positive regulation of cell population proliferation]
GO:0016020 [membrane]
GO:0031093 [platelet alpha granule lumen]
GO:0035470 [positive regulation of vascular wound healing]
GO:0038084 [vascular endothelial growth factor signaling pathway]
GO:0042056 [chemoattractant activity]
GO:0042802 [identical protein binding]
GO:0043183 [vascular endothelial growth factor receptor 1 binding]
GO:0045766 [positive regulation of angiogenesis]
GO:0048010 [vascular endothelial growth factor receptor signaling pathway]
GO:0048018 [receptor ligand activity]
GO:0050731 [positive regulation of peptidyl-tyrosine phosphorylation]
GO:0050918 [positive chemotaxis]
GO:0050930 [induction of positive chemotaxis]
GO:0051781 [positive regulation of cell division]
GO:0060048 [cardiac muscle contraction]
GO:0060754 [positive regulation of mast cell chemotaxis]
GO:0060976 [coronary vasculature development]
Show all
207 aa
21.6 kDa
Yes 0
VEGFB-202
ENSP00000401550
ENST00000426086
P49765
[Direct mapping] Vascular endothelial growth factor B
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
RAS pathway related proteins
Cancer-related genes
   Candidate cancer biomarkers
FDA approved drug targets
   Biotech drugs
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001666 [response to hypoxia]
GO:0001934 [positive regulation of protein phosphorylation]
GO:0001938 [positive regulation of endothelial cell proliferation]
GO:0002040 [sprouting angiogenesis]
GO:0005172 [vascular endothelial growth factor receptor binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0008083 [growth factor activity]
GO:0008201 [heparin binding]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010629 [negative regulation of gene expression]
GO:0016020 [membrane]
GO:0030949 [positive regulation of vascular endothelial growth factor receptor signaling pathway]
GO:0031093 [platelet alpha granule lumen]
GO:0035470 [positive regulation of vascular wound healing]
GO:0038084 [vascular endothelial growth factor signaling pathway]
GO:0042056 [chemoattractant activity]
GO:0043066 [negative regulation of apoptotic process]
GO:0043183 [vascular endothelial growth factor receptor 1 binding]
GO:0043524 [negative regulation of neuron apoptotic process]
GO:0045766 [positive regulation of angiogenesis]
GO:0048010 [vascular endothelial growth factor receptor signaling pathway]
GO:0048018 [receptor ligand activity]
GO:0050918 [positive chemotaxis]
GO:0050930 [induction of positive chemotaxis]
GO:0051781 [positive regulation of cell division]
GO:0051897 [positive regulation of protein kinase B signaling]
GO:0060754 [positive regulation of mast cell chemotaxis]
GO:0070374 [positive regulation of ERK1 and ERK2 cascade]
Show all
188 aa
21.3 kDa
Yes 0
VEGFB-203
ENSP00000442526
ENST00000541681
H0YGB6
[Direct mapping] Vascular endothelial growth factor B
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
RAS pathway related proteins
Show all
32 aa
2.6 kDa
No 0

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