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CCDC106
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:60.9 nTPM
FANTOM5:85.6 Scaled Tags Per Million
Pig:111.3 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041925Antibody HPA043219
Glial cells LowLow
Neuronal cells LowHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 121.5
Min nTPM: 18.5
Std nTPM: 19.5
Median nTPM: 60.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 121.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 117.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 114.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 113.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 112.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 110.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 100.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 97.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 96.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 96.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 94.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 93.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 92.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 91.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 90.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 90.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 88.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 88.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 86.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 85.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 85.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 85.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 84.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 84.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 84.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 83.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 82.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 82.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 82.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 82.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 81.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 81.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 81.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 81.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 80.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 80.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 80.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 79.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 79.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 79.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 79.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 79.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 79.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 79.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 78.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 77.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 77.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 77.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 77.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 77.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 77.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 77.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 76.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 76.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 76.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 76.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 75.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 75.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 75.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 75.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 75.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 73.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 73.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 73.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 73.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 73.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 72.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 72.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 71.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 70.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 70.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 69.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 69.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 69.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 69.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 69.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 69.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 68.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 68.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 67.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 67.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 67.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 67.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 66.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 66.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 66.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 66.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 66.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 65.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 65.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 65.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 65.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 65.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 65.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 64.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 64.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 64.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 64.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 64.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 64.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 64.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 64.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 63.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 63.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 63.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 63.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 63.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 63.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 63.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 63.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 63.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 62.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 62.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 62.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 62.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 61.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 61.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 61.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 61.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 60.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 60.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 60.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 60.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 60.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 60.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 59.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 59.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 58.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 57.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 57.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 57.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 57.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 56.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 56.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 56.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 56.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 55.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 55.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 55.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 55.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 55.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 54.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 54.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 54.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 54.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 53.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 53.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 53.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 53.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 53.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 53.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 53.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 53.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 52.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 52.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 52.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 51.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 51.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 51.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 51.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 50.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 50.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 49.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 49.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 48.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 48.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 48.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 48.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 48.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 48.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 48.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 48.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 47.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 47.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 47.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 47.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 47.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 46.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 46.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 46.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 45.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 45.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 45.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 45.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 45.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 44.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 44.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 44.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 44.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 44.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 44.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 44.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 43.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 43.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 42.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 42.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 42.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 42.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 42.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 41.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 41.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 41.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 40.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 40.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 40.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 40.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 39.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 38.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 37.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 37.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 37.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 37.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 36.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 36.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 36.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 35.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 35.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 35.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 34.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 34.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 33.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 33.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 31.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 30.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 29.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 29.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 28.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 28.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 27.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 25.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 24.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 24.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 23.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 23.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 21.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.6
FF:10164-103B2 76 years, female 85.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.3
Pig sample Sample description nTPM
Caudate
nTPM: 111.3
Samples: 4

Max nTPM: 144.3
Min nTPM: 86.1
Sample A Female 86.1
Sample B Female 114.9
Sample C Male 144.3
Sample D Male 99.9

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