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SLC19A1
HPA
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  • SLC19A1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC19A1
Synonyms FOLT, RFC1
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 19 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.3
Chromosome location (bp) 45493572 - 45573365
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000173638 (version 109)
Entrez gene 6573
HGNC HGNC:10937
UniProt P41440 (UniProt - Evidence at protein level)
neXtProt NX_P41440
GeneCards SLC19A1
Antibodypedia SLC19A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Antiporter that mediates the import of reduced folates or a subset of cyclic dinucleotides, driven by the export of organic anions 1, 2, 3, 4, 5, 6, 7, 8, 9. Mechanistically, acts as a secondary active transporter, which exports intracellular organic anions down their concentration gradients to facilitate the uptake of its substrates 10, 11, 12. Has high affinity for N5-methyltetrahydrofolate, the predominant circulating form of folate 13, 14, 15. Also able to mediate the import of antifolate drug methotrexate 16, 17, 18, 19. Also acts as an importer of immunoreactive cyclic dinucleotides, such as cyclic GMP-AMP (2'-3'-cGAMP), an immune messenger produced in response to DNA virus in the cytosol, and its linkage isomer 3'-3'-cGAMP, thus playing a role in triggering larger immune responses 20, 21, 22. 5-amino-4-imidazolecarboxamide riboside (AICAR), when phosphorylated to AICAR monophosphate, can serve as an organic anion for antiporter activity 23.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Antiport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Folate-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

The membrane protein encoded by this gene is a transporter of folate and is involved in the regulation of intracellular concentrations of folate. Three transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Mar 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC19A1-201
ENSP00000308895
ENST00000311124
P41440
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005542 [folic acid binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006855 [xenobiotic transmembrane transport]
GO:0007565 [female pregnancy]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0008517 [folic acid transmembrane transporter activity]
GO:0008518 [folate:anion antiporter activity]
GO:0015297 [antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0031526 [brush border membrane]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0046655 [folic acid metabolic process]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0055085 [transmembrane transport]
GO:0061507 [2',3'-cyclic GMP-AMP binding]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
GO:0098838 [folate transmembrane transport]
GO:0140360 [cyclic-GMP-AMP transmembrane transporter activity]
GO:0140361 [cyclic-GMP-AMP transmembrane import across plasma membrane]
GO:0150104 [transport across blood-brain barrier]
GO:1904447 [folate import across plasma membrane]
Show all
591 aa
64.9 kDa
No >9
SLC19A1-202
ENSP00000369347
ENST00000380010
P41440
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005542 [folic acid binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006855 [xenobiotic transmembrane transport]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0008517 [folic acid transmembrane transporter activity]
GO:0008518 [folate:anion antiporter activity]
GO:0015297 [antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0046655 [folic acid metabolic process]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0055085 [transmembrane transport]
GO:0061507 [2',3'-cyclic GMP-AMP binding]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
GO:0098838 [folate transmembrane transport]
GO:0140360 [cyclic-GMP-AMP transmembrane transporter activity]
GO:0140361 [cyclic-GMP-AMP transmembrane import across plasma membrane]
GO:0150104 [transport across blood-brain barrier]
GO:1904447 [folate import across plasma membrane]
Show all
489 aa
54.3 kDa
No >9
SLC19A1-203
ENSP00000393988
ENST00000417954
H0Y4T2
[Direct mapping] Reduced folate transporter
Q59GP0
[Target identity:100%; Query identity:100%] Solute carrier family 19 member 1 isoform b variant
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005887 [integral component of plasma membrane]
GO:0008518 [folate:anion antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0035461 [vitamin transmembrane transport]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
Show all
269 aa
29.2 kDa
No 5
SLC19A1-204
ENSP00000401850
ENST00000427839
C9JKP4
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005887 [integral component of plasma membrane]
GO:0008518 [folate:anion antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0035461 [vitamin transmembrane transport]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
Show all
182 aa
20.5 kDa
No 5
SLC19A1-205
ENSP00000411345
ENST00000443742
C9J8K6
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005887 [integral component of plasma membrane]
GO:0008518 [folate:anion antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0035461 [vitamin transmembrane transport]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
Show all
154 aa
17.5 kDa
No 3
SLC19A1-209
ENSP00000441772
ENST00000485649
P41440
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005542 [folic acid binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006855 [xenobiotic transmembrane transport]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0008517 [folic acid transmembrane transporter activity]
GO:0008518 [folate:anion antiporter activity]
GO:0015297 [antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0046655 [folic acid metabolic process]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0055085 [transmembrane transport]
GO:0061507 [2',3'-cyclic GMP-AMP binding]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
GO:0098838 [folate transmembrane transport]
GO:0140360 [cyclic-GMP-AMP transmembrane transporter activity]
GO:0140361 [cyclic-GMP-AMP transmembrane import across plasma membrane]
GO:0150104 [transport across blood-brain barrier]
GO:1904447 [folate import across plasma membrane]
Show all
551 aa
60 kDa
No >9
SLC19A1-211
ENSP00000435780
ENST00000528477
E9PIL5
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005887 [integral component of plasma membrane]
GO:0008518 [folate:anion antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0035461 [vitamin transmembrane transport]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
Show all
60 aa
6.8 kDa
No 1
SLC19A1-212
ENSP00000457278
ENST00000567670
H3BTQ3
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005542 [folic acid binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0008518 [folate:anion antiporter activity]
GO:0015297 [antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
GO:1904447 [folate import across plasma membrane]
Show all
545 aa
60.1 kDa
No >9
SLC19A1-213
ENSP00000498221
ENST00000650808
P41440
[Direct mapping] Reduced folate transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005542 [folic acid binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006855 [xenobiotic transmembrane transport]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0008517 [folic acid transmembrane transporter activity]
GO:0008518 [folate:anion antiporter activity]
GO:0015297 [antiporter activity]
GO:0015350 [methotrexate transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015884 [folic acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0046655 [folic acid metabolic process]
GO:0051180 [vitamin transport]
GO:0051958 [methotrexate transport]
GO:0055085 [transmembrane transport]
GO:0061507 [2',3'-cyclic GMP-AMP binding]
GO:0071702 [organic substance transport]
GO:0090482 [vitamin transmembrane transporter activity]
GO:0098838 [folate transmembrane transport]
GO:0140360 [cyclic-GMP-AMP transmembrane transporter activity]
GO:0140361 [cyclic-GMP-AMP transmembrane import across plasma membrane]
GO:0150104 [transport across blood-brain barrier]
GO:1904447 [folate import across plasma membrane]
Show all
489 aa
54.3 kDa
No >9

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