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TDRD12
HPA
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  • TDRD12
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TDRD12
Synonyms ECAT8, FLJ13072
Gene descriptioni

Full gene name according to HGNC.

Tudor domain containing 12
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.11
Chromosome location (bp) 32719753 - 32829580
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000173809 (version 109)
Entrez gene 91646
HGNC HGNC:25044
UniProt Q587J7 (UniProt - Evidence at transcript level)
neXtProt NX_Q587J7
GeneCards TDRD12
Antibodypedia TDRD12 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Probable ATP-binding RNA helicase required during spermatogenesis to repress transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Involved in the secondary piRNAs metabolic process. Acts via the PET complex, a multiprotein complex required during the secondary piRNAs metabolic process for the PIWIL2 slicing-triggered loading of PIWIL4 piRNAs.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, Helicase, Hydrolase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Differentiation, Meiosis, RNA-mediated gene silencing, Spermatogenesis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in several processes, including gamete generation; gene silencing by RNA; and piRNA metabolic process. Predicted to be part of PET complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TDRD12-201
ENSP00000390621
ENST00000421545
Q587J7
[Direct mapping] Putative ATP-dependent RNA helicase TDRD12
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003674 [molecular_function]
GO:0003676 [nucleic acid binding]
GO:0003724 [RNA helicase activity]
GO:0004386 [helicase activity]
GO:0005524 [ATP binding]
GO:0005575 [cellular_component]
GO:0007140 [male meiotic nuclear division]
GO:0007283 [spermatogenesis]
GO:0009566 [fertilization]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0030154 [cell differentiation]
GO:0031047 [gene silencing by RNA]
GO:0034587 [piRNA processing]
GO:0043046 [DNA methylation involved in gamete generation]
GO:0051321 [meiotic cell cycle]
GO:1990923 [PET complex]
Show all
395 aa
45 kDa
No 0
TDRD12-202
ENSP00000416248
ENST00000444215
Q587J7
[Direct mapping] Putative ATP-dependent RNA helicase TDRD12
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000166 [nucleotide binding]
GO:0003674 [molecular_function]
GO:0003676 [nucleic acid binding]
GO:0003724 [RNA helicase activity]
GO:0004386 [helicase activity]
GO:0005524 [ATP binding]
GO:0005575 [cellular_component]
GO:0007140 [male meiotic nuclear division]
GO:0007283 [spermatogenesis]
GO:0009566 [fertilization]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0030154 [cell differentiation]
GO:0031047 [gene silencing by RNA]
GO:0034587 [piRNA processing]
GO:0043046 [DNA methylation involved in gamete generation]
GO:0051321 [meiotic cell cycle]
GO:1990923 [PET complex]
Show all
1177 aa
132.6 kDa
No 0
TDRD12-204
ENSP00000489971
ENST00000637289
A0A1B0GU57
[Direct mapping] Putative ATP-dependent RNA helicase TDRD12
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
350 aa
39.6 kDa
No 0
TDRD12-205
ENSP00000492643
ENST00000639142
A0A1W2PRK2
[Direct mapping] Putative ATP-dependent RNA helicase TDRD12
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003676 [nucleic acid binding]
GO:0005524 [ATP binding]
GO:0007283 [spermatogenesis]
GO:0030154 [cell differentiation]
GO:0031047 [gene silencing by RNA]
GO:0051321 [meiotic cell cycle]
Show all
1330 aa
150.5 kDa
No 0
TDRD12-206
ENSP00000496698
ENST00000647536
A0A2R8Y872
[Direct mapping] Putative ATP-dependent RNA helicase TDRD12
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003676 [nucleic acid binding]
GO:0005524 [ATP binding]
GO:0007283 [spermatogenesis]
GO:0030154 [cell differentiation]
GO:0031047 [gene silencing by RNA]
GO:0051321 [meiotic cell cycle]
Show all
1335 aa
151.1 kDa
No 0

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