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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:243.2 nTPM
HPA:152.8 nTPM
GTEx:243.2 nTPM
FANTOM5:682.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.8
overview
Male, age 65
Small intestine sample 232
nTPM: 151.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 184.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 131.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 143.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 243.2
Samples: 187

Max nTPM: 478.1
Min nTPM: 141.1
Std nTPM: 67.4
Median nTPM: 219.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 478.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 475.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 464.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 447.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 438.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 419.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 419.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 405.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 381.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 378.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 377.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 372.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 362.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 358.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 356.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 355.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 350.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 349.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 343.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 342.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 336.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 334.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 328.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 327.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 323.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 320.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 317.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 316.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 313.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 309.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 304.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 304.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 299.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 298.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 297.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 294.1
GTEX-1192X-2526-SM-59868 50-59 years, male 293.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 290.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 289.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 288.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 287.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 286.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 284.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 277.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 276.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 274.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 274.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 273.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 272.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 270.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 268.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 265.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 265.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 262.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 262.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 262.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 260.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 258.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 253.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 249.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 245.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 244.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 244.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 243.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 241.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 241.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 239.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 236.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 236.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 235.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 235.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 235.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 235.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 234.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 234.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 233.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 233.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 232.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 231.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 231.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 231.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 229.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 228.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 228.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 227.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 227.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 227.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 223.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 223.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 222.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 221.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 221.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 221.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 219.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 218.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 218.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 218.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 217.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 217.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 217.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 216.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 216.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 215.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 215.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 215.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 214.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 213.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 213.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 213.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 212.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 212.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 211.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 209.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 208.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 208.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 207.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 207.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 207.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 207.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 206.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 206.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 204.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 204.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 204.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 203.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 203.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 203.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 203.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 203.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 203.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 202.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 201.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 201.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 201.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 201.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 200.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 200.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 199.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 198.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 198.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 198.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 197.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 197.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 197.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 196.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 195.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 195.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 194.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 193.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 193.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 192.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 192.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 192.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 191.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 191.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 191.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 189.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 188.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 188.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 188.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 187.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 186.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 186.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 185.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 184.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 184.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 183.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 182.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 182.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 181.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 179.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 177.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 177.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 176.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 175.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 175.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 174.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 173.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 172.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 170.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 164.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 162.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 162.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 157.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 150.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 141.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 141.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

682.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 682.9
FF:10024-101D6 15,40,85 years, mixed 682.9

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