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PHC3
HPA
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  • PHC3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PHC3
Synonyms EDR3, FLJ12729, FLJ12967, HPH3
Gene descriptioni

Full gene name according to HGNC.

Polyhomeotic homolog 3
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband q26.2
Chromosome location (bp) 170086732 - 170181749
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000173889 (version 109)
Entrez gene 80012
HGNC HGNC:15682
UniProt Q8NDX5 (UniProt - Evidence at protein level)
neXtProt NX_Q8NDX5
GeneCards PHC3
Antibodypedia PHC3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, DNA-binding
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Located in nucleoplasm. Part of PRC1 complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PHC3-202
ENSP00000417860
ENST00000466189
C9J6H0
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
182 aa
19.3 kDa
No 0
PHC3-203
ENSP00000419089
ENST00000467570
E7EX82
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0008270 [zinc ion binding]
GO:0046872 [metal ion binding]
Show all
828 aa
89.1 kDa
No 0
PHC3-206
ENSP00000419899
ENST00000475729
C9JYH7
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
247 aa
25.8 kDa
No 0
PHC3-208
ENSP00000417540
ENST00000481639
G5E9U7
[Direct mapping] Polyhomeotic like 3 (Drosophila), isoform CRA_a; Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
147 aa
15.8 kDa
No 0
PHC3-209
ENSP00000418835
ENST00000484068
H7C528
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
161 aa
18.3 kDa
No 0
PHC3-210
ENSP00000418039
ENST00000484931
C9JAU4
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
214 aa
23.2 kDa
No 0
PHC3-211
ENSP00000417360
ENST00000486042
H7C4H9
[Direct mapping] Polyhomeotic-like protein 3
Show all
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
223 aa
24.1 kDa
No 0
PHC3-214
ENSP00000420271
ENST00000494943
Q8NDX5
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0008270 [zinc ion binding]
GO:0031519 [PcG protein complex]
GO:0035102 [PRC1 complex]
GO:0042393 [histone binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
Show all
983 aa
106.2 kDa
No 0
PHC3-215
ENSP00000420294
ENST00000495893
Q8NDX5
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0008270 [zinc ion binding]
GO:0031519 [PcG protein complex]
GO:0035102 [PRC1 complex]
GO:0042393 [histone binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
Show all
995 aa
107.5 kDa
No 0
PHC3-217
ENSP00000420454
ENST00000497658
Q8NDX5
[Direct mapping] Polyhomeotic-like protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0008270 [zinc ion binding]
GO:0031519 [PcG protein complex]
GO:0035102 [PRC1 complex]
GO:0042393 [histone binding]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
Show all
151 aa
16.2 kDa
No 0

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